View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_38 (Length: 363)
Name: NF16912_low_38
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 46187352 - 46187672
Alignment:
| Q |
19 |
ctaccccacaaaataaacacaaagaagaagaaccccattatcccaattcacagttacaacccctcccacgaagcaacactcgttcctattctcagatgga |
118 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46187352 |
ctaccccgcaaaataaacacaaagaagaagaaccccattatcccaattcacagttacagcccctcccacgaagcaacactcgttcctattctcagatgga |
46187451 |
T |
|
| Q |
119 |
aaacatgtgattgctgcaattaaggtttgtgctcttgctgagaagcttgatggggttaatcatatgagcttggttatgggttcttttgttgataagctta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46187452 |
aaacatgtgattgctgcaattaaggtttgtgctcttgctgagaagcttgatggggttaatcatatgagcttggttatgggttcttttgttgataagctta |
46187551 |
T |
|
| Q |
219 |
cttttaaggacatgtttgttgttcttaaggataaagaagatagagaacaagttcgacatttaattctttgattggataaaattacatgcctctctctttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46187552 |
cttttaaggacatgtttgttgttcttaaggataaagaagaaagagaacaagttcgacatttaattctttgattggataaaatcacatgcctctctctttt |
46187651 |
T |
|
| Q |
319 |
catgttttcaatttaatttgg |
339 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
46187652 |
catgttttcaattcaatttgg |
46187672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 6381050 - 6381360
Alignment:
| Q |
19 |
ctaccccacaaaataaacacaaagaagaagaaccccattatcccaattcacagttacaacccctcccacgaagcaacactcgttcctattctcagatgga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
6381050 |
ctaccccacaaaataaacacaaagaagaagaaccccattatccccattcacagttacaacccatcccacgaagcaacactcattcctattctcagatgga |
6381149 |
T |
|
| Q |
119 |
aaacatgtgattgctgcaattaaggtttgtgctcttgctgagaagcttgatggggttaatcatatgagcttggttatgggttcttttgttgataagctta |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6381150 |
aaacatgtgattgctgcaattaaggtttgtgctcatgctgagaaggttgatggggttaatcatatgaacttggttatgggttcttttgttgataagctta |
6381249 |
T |
|
| Q |
219 |
cttttaaggacatgtttgttgttcttaaggataaagaagatagagaacaagttcgacatttaattctttgattggataaaattacatgcctctctctttt |
318 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6381250 |
cttttaatgacatgtttgttgttcttaaggataaagcggatagagaacaagttcgacatttaattctttgattggataaaattacatg--tctctctttt |
6381347 |
T |
|
| Q |
319 |
catgttttcaatt |
331 |
Q |
| |
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||||||||||||| |
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| T |
6381348 |
catgttttcaatt |
6381360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 29148365 - 29148677
Alignment:
| Q |
19 |
ctaccccacaaaataaacacaaagaagaagaaccccattatcccaattcacagttacaacccctcccacgaagcaacactcgttcctattctcagatgga |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29148365 |
ctaccccacaaaataaacataaagaagaagaaccccattatccccattcacaattacagcccctcccacgaagcaacaatcgttcctattctcagatgga |
29148464 |
T |
|
| Q |
119 |
aaacatgtgattgctgcaattaaggtttgtgctcttgctgagaagcttgatggggttaatcatatgagcttggttatgggttcttttgttgataagctta |
218 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
29148465 |
aaacatgtgattggtgcaattaaggtttgtgctcttgctgagaaggttgatggggttaatcatatgaacttgattatgggttcttttgttgataagctta |
29148564 |
T |
|
| Q |
219 |
cttttaaggacatgtttgttgttcttaaggataaagaagatagagaacaagttcgacatttaattctttgattggataaaattacatgcctctctctttt |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
29148565 |
cttttaaggacatgtttgttgttcttaaggataaagcagatagagatcaagttcaacatttaattctttgattggataaaattacatgtctatctctttt |
29148664 |
T |
|
| Q |
319 |
catgttttcaatt |
331 |
Q |
| |
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||||||||||||| |
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|
| T |
29148665 |
catgttttcaatt |
29148677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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