View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_39 (Length: 362)
Name: NF16912_low_39
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 47385605 - 47385938
Alignment:
| Q |
18 |
gcactgacattgtagaaaatgacatgttgttgtcttcaatgggagcaatggaggagcaaagagaaccttgtagtccagtattaatagctactaagaaacc |
117 |
Q |
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| T |
47385605 |
gcactgacattgtagaaaatgacatgttgttgtcttcaatgggagcaatggaggagcaaagagaaccttgtagtccagtattaatagctactaagaaacc |
47385704 |
T |
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| Q |
118 |
aaaaatccataattttccaccacctttgacaacgatgagaggatcagaatctcttcgtgttagaccccaccgtgaagatggtaggttagtaattgaagtc |
217 |
Q |
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| T |
47385705 |
aaaaatccataattttccaccacctttgacaacgatgagaggatcagaatctcttcgtgttagaccccaccgtgaagatggtaggttagtaattgaagtc |
47385804 |
T |
|
| Q |
218 |
acaaaggtcccaccaagtacctcatgttttcaagctgatagaagccatggccgtcttcgtctctgttttttgacaaatgagactacaagttttgacccgg |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47385805 |
acaaaggtcccaccaagtacatcatgttttcaagctgatagaagccatggccgtcttcgtctctgttttttgacaaatgagactacaagttttgacccgg |
47385904 |
T |
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| Q |
318 |
aagaagaagaggatgttgatgttgatgatgatga |
351 |
Q |
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| T |
47385905 |
aacaagaagaggatgttgatgttgatgatgatga |
47385938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 47373322 - 47373020
Alignment:
| Q |
20 |
actgacattgtagaaaatgacatgttgttgtcttcaatgggagcaatggaggagcaaagagaaccttgtagtccagtattaatagctactaagaaaccaa |
119 |
Q |
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| T |
47373322 |
actgacattgtagaaaacgacttattgttgtcttcaatgggaacaatggag---caaagacaaccttgttctcaagttttagcagctactaagaaagtga |
47373226 |
T |
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| Q |
120 |
aaatccataattttccaccacctttgacaacgatgagaggatcagaatctcttcgtgttagaccccaccgtgaagatggtaggttagtaattgaagtcac |
219 |
Q |
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| T |
47373225 |
aaactcagaattttccaccacctttgacaaccataagaggatcagaatcttttcatgttagaacccaccgtggagatggaaggttggtgattgaagtcac |
47373126 |
T |
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| Q |
220 |
aaaggtcccaccaagtacctcatgttttcaagctgatagaagccatggccgtcttcgtctctgttttttgacaaatgagactacaagttttgacccggaa |
319 |
Q |
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||||||||||||||||| || || |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47373125 |
taaggtcccaccaagtacttcttgctttcaagctgatagaagccatggctgtcttcgtctctattttttgacaaatgagactacaagttttgacccggaa |
47373026 |
T |
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| Q |
320 |
gaagaa |
325 |
Q |
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|||||| |
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| T |
47373025 |
gaagaa |
47373020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 20976602 - 20976673
Alignment:
| Q |
188 |
cgtgaagatggtaggttagtaattgaagtcacaaaggtcccaccaagtacctcatgttttcaagctgataga |
259 |
Q |
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||||||||||| ||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
20976602 |
cgtgaagatggaaggttggcaattgaagtaaaaaaggtcccaccaagtacctcatgttttcaagctgataga |
20976673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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