View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16912_low_4 (Length: 655)
Name: NF16912_low_4
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 44966383 - 44966749
Alignment:
| Q |
16 |
gatatgacttcaatgtcgtatgatgtatctgaatcatcataattaatagtactagctcactagtactttttgaaatagatactttaatggagaaaagggc |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44966383 |
gatatgacttcaatgtcatatgatgtatctgaatcatcataattagtagtactagctcactagttctttttgaaatagatactttaatggagaaaagggc |
44966482 |
T |
|
| Q |
116 |
aaagggggagccgggagaggagaggaattacaaatactttgtttgagatcatcataaatatgggtcatctaatatttgtcaattgtcatcnnnnnnntta |
215 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44966483 |
aaagggagag-------aggagaggaattacaaatactttgtttcagatcatcataaatatgggtcatctaatatttgtcaattgtcatcaaaaaa-tta |
44966574 |
T |
|
| Q |
216 |
agactaacatttttgcattttggtnnnnnnnnnnnntt------gcattgaaataacatcttttaaatgtttaaacagtcgaatataaaattctaaaata |
309 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44966575 |
agactaacatttttgcattttggtaaaaaaaataaattaaaattgcattgaaaaaacatcttttaaatgtttaaacagtcgaatataaaattctaaaata |
44966674 |
T |
|
| Q |
310 |
aaattttcataccaaattc-tttaacattttatattgttcgagttgtttatgacatgttgacatttcacgggcat |
383 |
Q |
| |
|
||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
44966675 |
aaattttcatattaaaatcttttaacattttatattgttcgagttgtttatgacatgttgacattccacgagcat |
44966749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 44966799 - 44966837
Alignment:
| Q |
383 |
tttgaaagtgtctattgtgtcatggcggctactacatga |
421 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44966799 |
tttgaaagtgtctattgtgtcatggcggatactacatga |
44966837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 428 - 596
Target Start/End: Complemental strand, 37445133 - 37444965
Alignment:
| Q |
428 |
gactaccaacaaaatcaaatatagcgatcctcggtgtcatttcagcaaacgcgtgattttgtgtagctgggtgtggtcatgttgaagatgcgcaacattt |
527 |
Q |
| |
|
|||||||||||||||||||| | |||||| ||||||||| ||| | | ||| || | ||||||||||||||||||||||||||||| || ||| || | |
|
|
| T |
37445133 |
gactaccaacaaaatcaaatttggcgatctgtggtgtcattccagtagaggcgcgactatgtgtagctgggtgtggtcatgttgaagacgctcaatatat |
37445034 |
T |
|
| Q |
528 |
gtttcttacatgtccatctttgacgtccatttggacgttggtccgagcgtggattggttttgatggggt |
596 |
Q |
| |
|
|||||| |||||| |||||||| ||||| ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
37445033 |
gtttctcacatgtacatctttggcgtccctttggctattggtgcgagcgtggattggttttgatggggt |
37444965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 487 - 635
Target Start/End: Complemental strand, 10070641 - 10070491
Alignment:
| Q |
487 |
tgtgtagctgggtgtggtcatgttgaagatgcgcaaca--tttgtttcttacatgtccatctttgacgtccatttggacgttggtccgagcgtggattgg |
584 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| ||||||||| || ||||||||| || |||||||||| ||||||| ||| ||||||||| |
|
|
| T |
10070641 |
tgtgtagctgggtgtgatcatgttgaagatgcttaacacatttgtttctcacgtgtccatctctggcgtccatttgaccgttggtgtgagtgtggattgg |
10070542 |
T |
|
| Q |
585 |
ttttgatggggttcgcacgcaggttatctcttatcacttcatccaatttac |
635 |
Q |
| |
|
|||||||||||| || |||||||| ||| ||||||||| ||||||||| |
|
|
| T |
10070541 |
ttttgatggggtcgatactcaggttatttctgatcacttcacccaatttac |
10070491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 384 - 596
Target Start/End: Complemental strand, 31742332 - 31742124
Alignment:
| Q |
384 |
ttgaaagtgtctattgtgtcatggcggctactacatgatagactgactaccaacaaaatcaaatatagcgatcctcggtgtcatttcagcaaacgcgtga |
483 |
Q |
| |
|
||||||||||||||| ||| ||| | ||||||| ||||||||| ||||||| |||||||| | | ||| |||||||||| ||||||| | || |
|
|
| T |
31742332 |
ttgaaagtgtctattttgttgtggagactactacgtgatagact----accaacataatcaaatttggtgatttgcggtgtcattccagcaaaggtacga |
31742237 |
T |
|
| Q |
484 |
ttttgtgtagctgggtgtggtcatgttgaagatgcgcaacatttgtttcttacatgtccatctttgacgtccatttggacgttggtccgagcgtggattg |
583 |
Q |
| |
|
|| |||||| |||| |||||||||||||||||| ||||| ||||||| ||||| |||||||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
31742236 |
ttatgtgtaattgggcatggtcatgttgaagatgctcaacacctgtttctcacatgcacatctttggcgtccatttgatcgttggtacgagcgtggatta |
31742137 |
T |
|
| Q |
584 |
gttttgatggggt |
596 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
31742136 |
gttttgattgggt |
31742124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University