View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16912_low_40 (Length: 340)

Name: NF16912_low_40
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16912_low_40
NF16912_low_40
[»] chr2 (26 HSPs)
chr2 (136-324)||(17117395-17117583)
chr2 (136-323)||(18915799-18915990)
chr2 (137-324)||(18172694-18172878)
chr2 (138-324)||(21746983-21747168)
chr2 (140-324)||(15457627-15457812)
chr2 (138-324)||(38985461-38985647)
chr2 (147-324)||(36059666-36059844)
chr2 (135-324)||(1226016-1226206)
chr2 (133-201)||(41096286-41096354)
chr2 (136-263)||(13997500-13997627)
chr2 (133-261)||(2063994-2064122)
chr2 (137-269)||(39081577-39081708)
chr2 (136-268)||(26151497-26151630)
chr2 (135-268)||(4856174-4856308)
chr2 (136-201)||(19367174-19367239)
chr2 (215-275)||(26261449-26261510)
chr2 (136-268)||(12269606-12269740)
chr2 (136-268)||(18676059-18676193)
chr2 (150-201)||(6530911-6530962)
chr2 (233-268)||(7993813-7993848)
chr2 (233-268)||(36481576-36481611)
chr2 (222-272)||(31273002-31273052)
chr2 (136-201)||(13020671-13020736)
chr2 (136-201)||(45619225-45619290)
chr2 (149-201)||(7993881-7993933)
chr2 (135-199)||(13001888-13001952)
[»] chr6 (17 HSPs)
chr6 (136-319)||(29308217-29308400)
chr6 (141-324)||(1092796-1092979)
chr6 (142-276)||(1690473-1690607)
chr6 (135-314)||(31861122-31861302)
chr6 (135-275)||(11088746-11088884)
chr6 (139-324)||(30915115-30915300)
chr6 (147-275)||(350592-350719)
chr6 (216-324)||(6294379-6294490)
chr6 (136-201)||(2618602-2618667)
chr6 (144-201)||(6361012-6361069)
chr6 (148-268)||(3748329-3748450)
chr6 (139-201)||(29401388-29401450)
chr6 (144-201)||(22503993-22504050)
chr6 (136-180)||(31258321-31258365)
chr6 (142-201)||(29149640-29149698)
chr6 (284-324)||(21946230-21946271)
chr6 (136-204)||(11575167-11575235)
[»] chr5 (32 HSPs)
chr5 (136-324)||(43511744-43511935)
chr5 (135-318)||(3349478-3349661)
chr5 (135-314)||(17513685-17513864)
chr5 (139-324)||(10591028-10591211)
chr5 (136-324)||(29156316-29156503)
chr5 (142-314)||(42291636-42291809)
chr5 (144-324)||(20976111-20976288)
chr5 (136-324)||(5829509-5829698)
chr5 (137-324)||(7390152-7390340)
chr5 (181-324)||(4734375-4734520)
chr5 (139-268)||(12661489-12661619)
chr5 (137-186)||(13424129-13424178)
chr5 (137-274)||(931545-931682)
chr5 (215-275)||(4177375-4177435)
chr5 (215-275)||(17463020-17463080)
chr5 (215-275)||(27351524-27351584)
chr5 (146-275)||(33281849-33281977)
chr5 (216-275)||(23069399-23069458)
chr5 (215-273)||(8379272-8379330)
chr5 (136-201)||(13474880-13474945)
chr5 (136-201)||(37047032-37047097)
chr5 (139-184)||(41612989-41613034)
chr5 (215-267)||(16061081-16061133)
chr5 (216-275)||(13288618-13288677)
chr5 (138-269)||(16515686-16515817)
chr5 (231-269)||(10033732-10033770)
chr5 (215-269)||(17326026-17326080)
chr5 (136-170)||(23069474-23069508)
chr5 (136-185)||(19099063-19099112)
chr5 (150-186)||(13656475-13656511)
chr5 (150-198)||(26377539-26377587)
chr5 (133-201)||(36718375-36718443)
[»] chr7 (28 HSPs)
chr7 (137-324)||(1366135-1366322)
chr7 (136-324)||(25610192-25610378)
chr7 (137-324)||(40001462-40001649)
chr7 (135-325)||(26282281-26282479)
chr7 (138-269)||(36438104-36438234)
chr7 (136-273)||(29730839-29730974)
chr7 (136-273)||(29741973-29742108)
chr7 (215-324)||(26633488-26633598)
chr7 (136-275)||(44875909-44876046)
chr7 (141-275)||(40840999-40841133)
chr7 (146-275)||(773640-773772)
chr7 (216-324)||(3799593-3799700)
chr7 (148-323)||(42312135-42312313)
chr7 (136-201)||(33910314-33910379)
chr7 (146-269)||(32956948-32957072)
chr7 (215-275)||(28589974-28590034)
chr7 (215-275)||(30739300-30739360)
chr7 (215-275)||(44002762-44002822)
chr7 (142-201)||(4100210-4100269)
chr7 (216-275)||(28105789-28105848)
chr7 (215-324)||(41852130-41852238)
chr7 (215-275)||(41908352-41908413)
chr7 (136-201)||(44893777-44893842)
chr7 (233-268)||(12251135-12251170)
chr7 (215-324)||(40737830-40737939)
chr7 (136-201)||(42160872-42160937)
chr7 (137-201)||(6379835-6379899)
chr7 (215-268)||(7636151-7636206)
[»] chr4 (22 HSPs)
chr4 (140-324)||(55134335-55134519)
chr4 (136-324)||(34982351-34982539)
chr4 (141-275)||(21791305-21791437)
chr4 (242-324)||(45172502-45172583)
chr4 (215-275)||(24449274-24449334)
chr4 (137-201)||(41038501-41038565)
chr4 (136-184)||(51066061-51066109)
chr4 (134-268)||(53011896-53012031)
chr4 (141-268)||(32130544-32130673)
chr4 (215-252)||(9925295-9925332)
chr4 (140-201)||(29221377-29221438)
chr4 (137-201)||(11681492-11681556)
chr4 (137-201)||(11689771-11689835)
chr4 (216-275)||(5545504-5545563)
chr4 (145-268)||(27632579-27632704)
chr4 (215-324)||(35653809-35653919)
chr4 (150-201)||(23256847-23256897)
chr4 (136-202)||(9607258-9607324)
chr4 (136-201)||(19661630-19661695)
chr4 (215-275)||(26328858-26328919)
chr4 (243-275)||(10575380-10575412)
chr4 (215-268)||(23425994-23426049)
[»] chr8 (22 HSPs)
chr8 (141-324)||(34523709-34523889)
chr8 (140-324)||(12531685-12531871)
chr8 (136-324)||(39697695-39697876)
chr8 (142-324)||(23567033-23567212)
chr8 (140-201)||(3574849-3574910)
chr8 (136-201)||(13585555-13585620)
chr8 (215-275)||(35875074-35875134)
chr8 (216-275)||(33452934-33452993)
chr8 (143-201)||(44664360-44664418)
chr8 (136-201)||(3445782-3445847)
chr8 (216-324)||(32098007-32098116)
chr8 (216-275)||(12268754-12268813)
chr8 (136-183)||(18420355-18420402)
chr8 (215-269)||(42076290-42076344)
chr8 (137-201)||(7858334-7858398)
chr8 (141-185)||(42951549-42951593)
chr8 (233-268)||(13585480-13585515)
chr8 (216-275)||(30915114-30915173)
chr8 (148-182)||(3471867-3471901)
chr8 (137-268)||(43926076-43926206)
chr8 (150-187)||(18112387-18112424)
chr8 (136-201)||(27074723-27074788)
[»] chr3 (22 HSPs)
chr3 (136-324)||(43905603-43905791)
chr3 (135-324)||(48626778-48626968)
chr3 (19-87)||(38251062-38251130)
chr3 (146-275)||(1649601-1649730)
chr3 (139-324)||(46904867-46905053)
chr3 (137-275)||(7767241-7767379)
chr3 (137-268)||(25598833-25598965)
chr3 (136-201)||(28132484-28132549)
chr3 (161-268)||(21596516-21596623)
chr3 (137-275)||(40151883-40152019)
chr3 (135-324)||(27303310-27303502)
chr3 (136-268)||(13401641-13401772)
chr3 (136-324)||(51147062-51147252)
chr3 (136-201)||(6715688-6715753)
chr3 (137-201)||(52654873-52654937)
chr3 (137-186)||(21784531-21784580)
chr3 (141-201)||(46791451-46791509)
chr3 (145-201)||(27729529-27729585)
chr3 (137-204)||(2669706-2669773)
chr3 (140-187)||(20762317-20762364)
chr3 (215-275)||(19965706-19965767)
chr3 (139-184)||(51939307-51939352)
[»] chr1 (29 HSPs)
chr1 (138-324)||(12971532-12971718)
chr1 (215-275)||(50371309-50371369)
chr1 (136-275)||(26486125-26486264)
chr1 (136-268)||(25930784-25930918)
chr1 (136-201)||(51109848-51109913)
chr1 (136-269)||(37873506-37873639)
chr1 (215-275)||(27703363-27703423)
chr1 (216-275)||(39080451-39080510)
chr1 (136-202)||(42740354-42740419)
chr1 (215-275)||(1269727-1269788)
chr1 (222-275)||(15441463-15441516)
chr1 (136-201)||(20905035-20905100)
chr1 (216-275)||(9777590-9777649)
chr1 (135-268)||(30004656-30004790)
chr1 (136-182)||(6150991-6151037)
chr1 (136-201)||(18127688-18127753)
chr1 (140-201)||(28885424-28885485)
chr1 (140-201)||(48722119-48722180)
chr1 (137-201)||(259-323)
chr1 (136-180)||(20470884-20470928)
chr1 (215-275)||(44836555-44836614)
chr1 (233-268)||(14084547-14084582)
chr1 (233-268)||(30899841-30899876)
chr1 (233-268)||(48722214-48722249)
chr1 (136-201)||(17487028-17487093)
chr1 (136-201)||(29207842-29207907)
chr1 (136-204)||(24183764-24183832)
chr1 (215-263)||(24556989-24557037)
chr1 (143-183)||(30899932-30899972)
[»] scaffold0034 (1 HSPs)
scaffold0034 (146-274)||(99092-99222)
[»] scaffold0181 (1 HSPs)
scaffold0181 (150-201)||(16897-16948)
[»] scaffold0564 (1 HSPs)
scaffold0564 (136-268)||(1243-1376)
[»] scaffold0035 (1 HSPs)
scaffold0035 (215-268)||(22633-22688)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 136 - 324
Target Start/End: Original strand, 17117395 - 17117583
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||    
T  17117395 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggcccccaataaaataaaaatgcaatttttttgtgtagctaagctttattaaa 17117494  T
Q  236 aaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  17117495 aaatcagaatcagaagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaatttactaacggtgtcgtttg 17117583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 136 - 323
Target Start/End: Original strand, 18915799 - 18915990
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnn----gtgtagctaagctttat 231  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||           ||| || ||||||||||    
T  18915799 cagggccgtccctataaaataggaggctcggctctctatttaaaatagggccccaataaaataaaaatgcaatttttttttttgtgcagttaagctttat 18915898  T
Q  232 taaaaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgttt 323  Q
    |||||||  ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||    
T  18915899 taaaaaaatagaatcagaagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaatttactaacggcgtcgttt 18915990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 137 - 324
Target Start/End: Original strand, 18172694 - 18172878
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaa 236  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||       ||||||| ||||||||||||||    
T  18172694 agggccgtccctatgaaatag-aggttcggctctctatttaaaataggtccccaataaaataaaaacgcaatttttttgtgtagccaagctttattaaaa 18172792  T
Q  237 aatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    ||||||||||||||||| ||||||||||||||||||||||       ||  |||||||||||||||||||||| ||||| ||||||||    
T  18172793 aatcagaatcagaagagtttctaaacatgaaacgaaatacaaaaaaatt--gtgaaagagaggtagaatttaccaacggcgtcgtttg 18172878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 138 - 324
Target Start/End: Original strand, 21746983 - 21747168
Alignment:
Q  138 gggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaa 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||       |||||  ||||||||||||||||    
T  21746983 gggccgtccctatgaaataggaggctcggctctctatttaaaataggtctccaataaaataaaaacacaatttttttgtgtaattaagctttattaaaaa 21747082  T
Q  238 atcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    |  ||||||| |||||||| |||||||||||||||||||       || ||||||||||||||||||||||||||||| ||||||||    
T  21747083 aatagaatcaaaagagcttttaaacatgaaacgaaatac-aaaaaattcagtgaaagagaggtagaatttactaacggcgtcgtttg 21747168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 140 - 324
Target Start/End: Complemental strand, 15457812 - 15457627
Alignment:
Q  140 gccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnn-gtgtagctaagctttattaaaaaa 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||  |||        ||||||||||||||||||||||||    
T  15457812 gccgtccctatgaaataggaggctcggctctctatttaaaataggtcttcaataaaataaaaacacaattctttttgtgtagctaagctttattaaaaaa 15457713  T
Q  239 tcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    ||| ||| |||||||||||| |||||||||||||| ||       ||||||||||||||| |||||||||||||| | ||||||||    
T  15457712 tcaaaataagaagagcttctgaacatgaaacgaaaaacaaaaaaattaagtgaaagagagatagaatttactaacagcgtcgtttg 15457627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 138 - 324
Target Start/End: Original strand, 38985461 - 38985647
Alignment:
Q  138 gggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnn-gtgtagctaagctttattaaaa 236  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | ||        |||||| |||||||||||||||    
T  38985461 gggccgtccctatgaaatag-aggctcggctctctatttaaaataggcccccaataaaataaaaacgtaattttttgtgtgtagttaagctttattaaaa 38985559  T
Q  237 aatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    ||||||||||||||||| ||||||| ||||||||||||||       |||||||||||||| |||||||| |||||||| ||| ||||    
T  38985560 aatcagaatcagaagagtttctaaaaatgaaacgaaatacaaaaaaattaagtgaaagagatgtagaattcactaacggcgtcttttg 38985647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 324
Target Start/End: Original strand, 36059666 - 36059844
Alignment:
Q  147 ctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngt-gtagctaagctttattaaaaaatcagaat 245  Q
    ||||||||||||||||||| |||| | |||||||||||| || | ||||||||||| ||||        | |||||||| ||| |||||||||||||| |    
T  36059666 ctatgaaataggaggctcgactctttttttaaaataggtacc-agtaaaataaaaacgcaattttttttttgtagctaaacttcattaaaaaatcagatt 36059764  T
Q  246 cagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttac-taacggtgtcgtttg 324  Q
    || |||| |||||||||||||||| |||||        |||||||||||||||||| ||||||| |||||| ||||||||    
T  36059765 cacaagaacttctaaacatgaaacaaaataaaataaaattaagtgaaagagaggtaaaatttacgtaacggcgtcgtttg 36059844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 324
Target Start/End: Original strand, 1226016 - 1226206
Alignment:
Q  135 acagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaa-nnnnnnngtgtagctaagctttatt- 232  Q
    |||||||||| |||||||||||||||||||| |||||| |||||||||||  |||  |||||||||||   ||        |||||||||| ||| |||     
T  1226016 acagggccgttcctatgaaataggaggctcgactctctttttaaaatagg--ccccttaaaataaaaacataattttttttgtgtagctaaacttcatta 1226113  T
Q  233 aaaaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaattta-ctaacggtgtcgtttg 324  Q
    ||||||||||||| |||||| ||||||||||||||||||||||        ||||||||||||||| |  |||||| |||||| |||||||||    
T  1226114 aaaaaatcagaattagaagaacttctaaacatgaaacgaaataaaaaaaaattaagtgaaagagagatgaaatttacctaacgatgtcgtttg 1226206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 41096286 - 41096354
Alignment:
Q  133 acacagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||  ||| | ||||||||||    
T  41096286 acacagggccgtccctgtgaaataggaggctcggctctctttttaaaatagacccctagtaaaataaaa 41096354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 263
Target Start/End: Complemental strand, 13997627 - 13997500
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnn-gtgtagctaagctttattaa 234  Q
    |||| |||| ||||||||||||||||||||| ||| | ||||||||||| || || |||||| |||| ||||        |||||||||||||| |||||    
T  13997627 caggaccgttcctatgaaataggaggctcggttctatttttaaaatagg-ccacagtaaaatcaaaacgcaattctttttgtgtagctaagcttcattaa 13997529  T
Q  235 aaaatcagaatcagaagagcttctaaaca 263  Q
    |||||||||||||||||| ||| ||||||    
T  13997528 aaaatcagaatcagaagaacttttaaaca 13997500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 261
Target Start/End: Complemental strand, 2064122 - 2063994
Alignment:
Q  133 acacagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttatt 232  Q
    |||||||||||| ||| |||||||||||||||  |||||| ||||||||||||||  | |||||| |||| | ||       |||||||||| ||| |||    
T  2064122 acacagggccgttcctgtgaaataggaggctcaactctctttttaaaataggtccgtagtaaaat-aaaacgtaatatctttgtgtagctaaacttcatt 2064024  T
Q  233 -aaaaaatcagaatcagaagagcttctaaa 261  Q
     |||||||||||||||||||| ||||||||    
T  2064023 aaaaaaatcagaatcagaagaccttctaaa 2063994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 269
Target Start/End: Complemental strand, 39081708 - 39081577
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaa 236  Q
    |||||||| |||||||||||||||| |||| ||| | |||||||||||| |||| |||||||||||   ||       |||||| ||||||| |||| ||    
T  39081708 agggccgttcctatgaaataggaggttcggttctatttttaaaataggt-cccagtaaaataaaaacataatttttttgtgtagttaagcttcattataa 39081610  T
Q  237 aatcagaatcagaagagcttctaaacatgaaac 269  Q
    ||||||||||| |||| ||| |||| |||||||    
T  39081609 aatcagaatcataagaacttttaaatatgaaac 39081577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 268
Target Start/End: Original strand, 26151497 - 26151630
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttatt--a 233  Q
    ||||||||||||  |||||||||||||| |||||||| ||||||||||| ||| | |||||| |||| | ||       ||||||||||  || |||  |    
T  26151497 cagggccgtccccgtgaaataggaggcttggctctctttttaaaataggcccctagtaaaat-aaaacgtaatttttttgtgtagctaaatttcattaaa 26151595  T
Q  234 aaaaatcagaatcagaagagcttctaaacatgaaa 268  Q
    |||||||||||||||||||  ||||||||||||||    
T  26151596 aaaaatcagaatcagaagaagttctaaacatgaaa 26151630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 268
Target Start/End: Complemental strand, 4856308 - 4856174
Alignment:
Q  135 acagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttatt-- 232  Q
    |||||| ||||||  |||||||||||||||| |||||| ||||||||||| ||| | |||||| |||| | ||       ||||||||||  || |||      
T  4856308 acagggtcgtccccgtgaaataggaggctcgactctctttttaaaataggcccctagtaaaat-aaaacgtaatttttttgtgtagctaaatttcattaa 4856210  T
Q  233 aaaaaatcagaatcagaagagcttctaaacatgaaa 268  Q
    ||||||||||||||||||||  ||||||||||||||    
T  4856209 aaaaaatcagaatcagaagaagttctaaacatgaaa 4856174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 19367174 - 19367239
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||| |||||||||||||| | |||||| |||||||||||  || | ||||||||||    
T  19367174 cagggccgtccctgtgaaataggaggcttgactctctttttaaaataggctcctagtaaaataaaa 19367239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 26261510 - 26261449
Alignment:
Q  215 gtgtagctaagctttattaaaaaa-tcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||| |||||||| ||||||||| ||| ||||| |||| ||||||||||||||||||||||    
T  26261510 gtgtaactaagcttcattaaaaaaatcataatcataagaacttctaaacatgaaacgaaata 26261449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 268
Target Start/End: Complemental strand, 12269740 - 12269606
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 235  Q
    |||| |||||||| |||||||| || |||| |||||| |||||||||||| || | ||||||||||  | ||       ||||||||||  || ||||||    
T  12269740 caggaccgtccctgtgaaatagtagactcgactctctttttaaaataggttcctattaaaataaaac-gtaatttttttgtgtagctaaatttcattaaa 12269642  T
Q  236 a---aatcagaatcagaagagcttctaaacatgaaa 268  Q
    |   |||||||||||||||| |||||||||||||||    
T  12269641 agaaaatcagaatcagaagaacttctaaacatgaaa 12269606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 268
Target Start/End: Original strand, 18676059 - 18676193
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 235  Q
    ||||| ||||||| ||||||| ||||||| ||||||| | ||||||||| ||| | ||||||||||  | ||       ||||||||||  || ||||||    
T  18676059 cagggtcgtccctgtgaaataagaggctcagctctctttataaaataggcccctagtaaaataaaac-gtaatttttttgtgtagctaaatttcattaaa 18676157  T
Q  236 a---aatcagaatcagaagagcttctaaacatgaaa 268  Q
    |   |||||||||||||||| |||||||||||||||    
T  18676158 aaaaaatcagaatcagaagaacttctaaacatgaaa 18676193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 6530962 - 6530911
Alignment:
Q  150 tgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||||||||||||| |||||||||||  || | ||||||||||    
T  6530962 tgaaataggaggctcggctctctttttaaaataggctcctattaaaataaaa 6530911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 7993848 - 7993813
Alignment:
Q  233 aaaaaatcagaatcagaagagcttctaaacatgaaa 268  Q
    |||||||||||||||||||| |||||||||||||||    
T  7993848 aaaaaatcagaatcagaagaacttctaaacatgaaa 7993813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 36481611 - 36481576
Alignment:
Q  233 aaaaaatcagaatcagaagagcttctaaacatgaaa 268  Q
    |||||||||||||||||||| |||||||||||||||    
T  36481611 aaaaaatcagaatcagaagaacttctaaacatgaaa 36481576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 31273002 - 31273052
Alignment:
Q  222 taagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaa 272  Q
    ||||||| |||||||||||| |||||||||| |||||||| || |||||||    
T  31273002 taagcttcattaaaaaatcaaaatcagaagaacttctaaaaattaaacgaa 31273052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 13020736 - 13020671
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||  |  ||||||||| |||||||||| ||||||||||| ||| | ||||||||||    
T  13020736 cagggccgtccccgtagaataggaggttcggctctctttttaaaataggcccctagtaaaataaaa 13020671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 45619290 - 45619225
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||  ||||||| |||||||| |||||| ||||||||||| ||  | ||||||||||    
T  45619290 cagggccgtccccgtgaaatacgaggctcgactctctttttaaaataggcccttagtaaaataaaa 45619225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 7993933 - 7993881
Alignment:
Q  149 atgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||| |||||||||| |||||||||||  || | ||||||||||    
T  7993933 atgaaataggaggttcggctctctttttaaaataggcacctagtaaaataaaa 7993881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 13001952 - 13001888
Alignment:
Q  135 acagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataa 199  Q
    |||||||||| ||||| ||||| |||| ||| |||||| ||||||||||| ||||  ||||||||    
T  13001952 acagggccgttcctataaaatatgaggatcgactctctttttaaaataggcccccggtaaaataa 13001888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 136 - 319
Target Start/End: Original strand, 29308217 - 29308400
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 235  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||       |||||| ||||||||||||||    
T  29308217 cagggccgtccccatgaaataggaggctcggctctctatttaaaataggcccccaataaaataaaaacgcaatttttttgtgtagttaagctttattaaa 29308316  T
Q  236 aaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtc 319  Q
    |||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  29308317 aaatcagaatcataagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaatttactaacggtgtc 29308400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 141 - 324
Target Start/End: Original strand, 1092796 - 1092979
Alignment:
Q  141 ccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatc 240  Q
    |||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||||| ||||        ||||||||||||||||||||||||     
T  1092796 ccgtccctatgaaataggaggctcggttctctatttaaaataggcctctaataaaataaaaacgcaatttttttatgtagctaagctttattaaaaaatt 1092895  T
Q  241 agaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    ||||||| ||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||| ||||    
T  1092896 agaatcaaaagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagatgtagaatttactaacggtgtcatttg 1092979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 142 - 276
Target Start/End: Original strand, 1690473 - 1690607
Alignment:
Q  142 cgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatca 241  Q
    |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||       |||||||||| |||||| |||||||||    
T  1690473 cgtctctatgaaataggaggctcggctctctatttaaaataggcctccaataaaataaaaatgcaatttttttgtgtagctaaactttataaaaaaatca 1690572  T
Q  242 gaatcagaagagcttctaaacatgaaacgaaatac 276  Q
    ||||||||| |||||||||||||||||||||||||    
T  1690573 gaatcagaaaagcttctaaacatgaaacgaaatac 1690607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 135 - 314
Target Start/End: Complemental strand, 31861302 - 31861122
Alignment:
Q  135 acagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaat-gcaannnnnnngtgtagctaagctttatta 233  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||  ||||       |||||| ||||||||||||    
T  31861302 acagggccgtccctatgaaataggaggctcgactctctatttaaaataggcccccaatagaataaaaaacgcaatttttttgtgtagttaagctttatta 31861203  T
Q  234 aaaaatc-agaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacg 314  Q
    |||||   ||||| |||||||||||||||||| |||||||||||       ||||||||||||||| |||||||||||||||    
T  31861202 aaaaaaatagaattagaagagcttctaaacataaaacgaaatac-aaaaaattaagtgaaagagagatagaatttactaacg 31861122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 11088884 - 11088746
Alignment:
Q  135 acagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaa 234  Q
    ||||||||||  ||||||||||||||||||  |||||| ||||||||||| ||||  ||||||||||||  ||       |||||||||| ||| |||||    
T  11088884 acagggccgtttctatgaaataggaggctcaactctctttttaaaataggccccc--taaaataaaaatataaattttttgtgtagctaaacttcattaa 11088787  T
Q  235 aaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  11088786 aaaatcagaattagaagaacttctaaacatgaaacgaaata 11088746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 324
Target Start/End: Original strand, 30915115 - 30915300
Alignment:
Q  139 ggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaa 238  Q
    |||||| ||||||||||| |||||||  |||||| ||||||||||||  | | ||||||||||||| |         ||||| ||||||| |||||||||    
T  30915115 ggccgttcctatgaaataagaggctcaactctctttttaaaataggtttc-agtaaaataaaaatgtattttttatttgtagttaagcttcattaaaaaa 30915213  T
Q  239 tcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttac-taacggtgtcgtttg 324  Q
    |||||||||||||| ||| |||||||||||| |||||        ||||||||||||||| || ||||||| |||||||||||||||    
T  30915214 tcagaatcagaagaacttataaacatgaaacaaaataaaataaaattaagtgaaagagagataaaatttacataacggtgtcgtttg 30915300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 275
Target Start/End: Complemental strand, 350719 - 350592
Alignment:
Q  147 ctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatcagaatc 246  Q
    ||||||||||||||| ||| |||||| ||||||||||||||||  |||||||||||   ||       |||||||||| ||| |||||||||| |||||     
T  350719 ctatgaaataggaggttcgactctctttttaaaataggtcccc--taaaataaaaacataacttttttgtgtagctaaacttcattaaaaaattagaatt 350622  T
Q  247 agaa-gagcttctaaacatgaaacgaaata 275  Q
    |||| || ||||||||||||||||||||||    
T  350621 agaaagaacttctaaacatgaaacgaaata 350592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 324
Target Start/End: Complemental strand, 6294490 - 6294379
Alignment:
Q  216 tgtagctaagctttattaaaaaa--tcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaattta-ctaa 312  Q
    ||||||||||||| |||||||||  ||||||||| |||| |||||||||||||||| |||||        ||| |||||||||||||  |||||| ||||    
T  6294490 tgtagctaagcttcattaaaaaaaatcagaatcaaaagaacttctaaacatgaaacaaaataaaataaaattatgtgaaagagaggtgaaatttacctaa 6294391  T
Q  313 cggtgtcgtttg 324  Q
    ||||||||||||    
T  6294390 cggtgtcgtttg 6294379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 2618667 - 2618602
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||| | |||||||||||| |||||||||| ||||||||||| ||| | ||||||||||    
T  2618667 cagggccgtccatgtgaaataggaggttcggctctctttttaaaataggcccctagtaaaataaaa 2618602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 6361069 - 6361012
Alignment:
Q  144 tccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||| | ||||||||||    
T  6361069 tccctgtgaaatagaaggctcggctctctttttaaaataggtccctagtaaaataaaa 6361012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 268
Target Start/End: Original strand, 3748329 - 3748450
Alignment:
Q  148 tatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgca--annnnnnngtgtagctaagctttattaaaaaatcagaat 245  Q
    ||||||||||||||||||| ||| | |||||||||||| || | |||||||||||||||          |||||||||||||| |||||||| ||| |||    
T  3748329 tatgaaataggaggctcggttctatttttaaaataggt-ccgagtaaaataaaaatgcattttttttgtgtgtagctaagcttcattaaaaagtcaaaat 3748427  T
Q  246 cagaagagcttctaaacatgaaa 268  Q
    ||||||| ||| |||| ||||||    
T  3748428 cagaagaacttttaaatatgaaa 3748450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 29401450 - 29401388
Alignment:
Q  139 ggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||||||||  |||||||||||||||| |||||| ||||||||||| ||| | ||||||||||    
T  29401450 ggccgtccccgtgaaataggaggctcgactctctttttaaaataggcccctagtaaaataaaa 29401388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 22504050 - 22503993
Alignment:
Q  144 tccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||||||||||||| ||||| ||||||||||  || || ||||||||||    
T  22504050 tccctatgaaataggaggctcggttctctttttaaaatagaccctcagtaaaataaaa 22503993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 31258321 - 31258365
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaa 180  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||    
T  31258321 cagggccgtccccgtgaaataggaggctcggctctctttttaaaa 31258365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 29149698 - 29149640
Alignment:
Q  142 cgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||| | | ||||||||||    
T  29149698 cgtccccatgaaatag-aggctcggctctctttttaaaataggtctctagtaaaataaaa 29149640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 21946271 - 21946230
Alignment:
Q  284 ttaagtgaaagagaggtagaattta-ctaacggtgtcgtttg 324  Q
    ||||||||||||||||| ||||||| ||||||||||||||||    
T  21946271 ttaagtgaaagagaggtggaatttacctaacggtgtcgtttg 21946230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 11575235 - 11575167
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatg 204  Q
    |||||||||||||||  | |  |||||||||||||| ||  |||||||| ||| |||||||||||||||    
T  11575235 cagggccgtccctatatatttagaggctcggctctcaatcaaaaataggcccctaataaaataaaaatg 11575167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 136 - 324
Target Start/End: Complemental strand, 43511935 - 43511744
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnn---gtgtagctaagctttatt 232  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||          ||||||||||||||||||    
T  43511935 cagggtcgtccctatgaaataggaggctcggctctctatttaaaataggcccccaataaaataaaaacgcaattttttttttgtgtagctaagctttatt 43511836  T
Q  233 aaaaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    |||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  43511835 aaaaaatcagaatcagcagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaatttactaacggtgtcgtttg 43511744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 135 - 318
Target Start/End: Original strand, 3349478 - 3349661
Alignment:
Q  135 acagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaa 234  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||       ||||||||||||||||||||    
T  3349478 acaggaccgtccctatgaaataggaggctcggctctctatttaaaataggtctccaataaaataaaaacgcaatttttttgtgtagctaagctttattaa 3349577  T
Q  235 aaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgt 318  Q
    ||||||||||||||||||| ||||||||||||||| ||||||       || ||||||||||||||| ||||||||||||||||    
T  3349578 aaaatcagaatcagaagagtttctaaacatgaaactaaatacaaaaaacttgagtgaaagagaggtataatttactaacggtgt 3349661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 135 - 314
Target Start/End: Original strand, 17513685 - 17513864
Alignment:
Q  135 acagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaa 234  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||       |||||| |||||||||||||    
T  17513685 acagggccgtccctatgtaataggaggctcgactctctatttataataggcccccaataaaataaaaatgcaattattttgtgtagttaagctttattaa 17513784  T
Q  235 aaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacg 314  Q
    ||||  ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| ||||    
T  17513785 aaaaatagaatcagaagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaatttaccaacg 17513864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 139 - 324
Target Start/End: Original strand, 10591028 - 10591211
Alignment:
Q  139 ggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaa 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||  | |||||||| |||||| ||||       |||||| |||||||||||||||||    
T  10591028 ggccgtccctatgaaataggaggctcggctctctatttaaaataga-cgccaataaa-taaaaacgcaatttttttgtgtagttaagctttattaaaaaa 10591125  T
Q  239 tcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    |||||||||||| || ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||||    
T  10591126 tcagaatcagaatagtttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaatttactaacggtgccgtttg 10591211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 136 - 324
Target Start/End: Complemental strand, 29156503 - 29156316
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 235  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||||||  ||||  ||||||||||| |||       |||||||||| ||||||||||    
T  29156503 cagggtcgtccctataaaataggaagctcggctctctatttaaaataggctcccac-aaaataaaaatacaatttttttgtgtagctaaactttattaaa 29156405  T
Q  236 aaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    |||||| |||||| |||||||||||||||||||| ||||||       |||| |||||||||||||||||||||||||||| |||||||    
T  29156404 aaatcaaaatcagtagagcttctaaacatgaaacaaaatacaaaaaaattaattgaaagagaggtagaatttactaacggtatcgtttg 29156316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 142 - 314
Target Start/End: Original strand, 42291636 - 42291809
Alignment:
Q  142 cgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatca 241  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||| ||||       |||||| ||| |||||| |||||||||    
T  42291636 cgtccctatgaaataggaggctcggctctctatttaaa-tagccccccaataaaataaaaacgcaatttttttgtgtagttaaactttataaaaaaatca 42291734  T
Q  242 gaatcagaagagcttctaaacatgaaacgaaatac--nnnnnnnttaagtgaaagagaggtagaatttactaacg 314  Q
    |||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||| ||||    
T  42291735 gaatcagaagagcttctaaacatgaaacgaaatacaaaaaaaaattaagtgaaagagaggtagaatttaccaacg 42291809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 144 - 324
Target Start/End: Complemental strand, 20976288 - 20976111
Alignment:
Q  144 tccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatcaga 243  Q
    ||||| ||||||||||||||||||||||||||||||||||| | ||||||   |||||| ||||       ||||||||| ||||||||||||||||| |    
T  20976288 tccctgtgaaataggaggctcggctctctatttaaaataggccaccaata---taaaaacgcaatttttttgtgtagctatgctttattaaaaaatcata 20976192  T
Q  244 atcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    ||||||||||||| |||||||  ||| ||||||       |||||||||||||||||||||||||||||||||||| ||||    
T  20976191 atcagaagagcttttaaacattgaaccaaatacaaaaaaattaagtgaaagagaggtagaatttactaacggtgtcatttg 20976111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 136 - 324
Target Start/End: Complemental strand, 5829698 - 5829509
Alignment:
Q  136 cagggccgtccctatgaaata--ggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngt-gtagctaagctttatt 232  Q
    ||||||||||| |||||||||  |||||||||||||| ||||||||||||| | | ||||||||||||||||||        | |||||||| |||||||    
T  5829698 cagggccgtccttatgaaatataggaggctcggctctttatttaaaataggcctcaaataaaataaaaatgcaattttttttttgtagctaaactttatt 5829599  T
Q  233 aaaaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    ||||||||||||||||||||||||||||||||  || |||||||       |||||||||||||||||||| ||||||||| ||||||||||    
T  5829598 aaaaaatcagaatcagaagagcttctaaacat--aatgaaatacaaaaaaattaagtgaaagagaggtagagtttactaacagtgtcgtttg 5829509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 324
Target Start/End: Original strand, 7390152 - 7390340
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnn-gtgtagctaagctttattaaa 235  Q
    |||||||| |||||||||||| |||||||| ||| | |||||||||| |||| ||||||||||||| | ||        |||||||||||||| ||||||    
T  7390152 agggccgttcctatgaaatagaaggctcggttctatttttaaaatag-tccctaataaaataaaaacgtaattttttgtgtgtagctaagcttcattaaa 7390250  T
Q  236 aaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaattta-ctaacggtgtcgtttg 324  Q
    ||||| ||||||||||| ||| ||||||| |||| ||| |        |||||||||||||||||  |||||| ||||||||||||||||    
T  7390251 aaatcggaatcagaagaacttttaaacataaaacaaaacaaaataaaattaagtgaaagagaggtgaaatttatctaacggtgtcgtttg 7390340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 324
Target Start/End: Original strand, 4734375 - 4734520
Alignment:
Q  181 taggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaa-tcagaatcagaagagcttctaaacatgaaacgaaatac-nn 278  Q
    |||||| ||||||||||||||| ||||       ||||||||||  ||||| |||||| | | ||||| ||||||||||||||||||||||||||||       
T  4734375 taggtctccaataaaataaaaacgcaatttttttgtgtagctaaattttataaaaaaaattaaaatcaaaagagcttctaaacatgaaacgaaatacaaa 4734474  T
Q  279 nnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
         |||||||||||||| ||||||||||||||||||||| ||||    
T  4734475 aaaaattaagtgaaagagatgtagaatttactaacggtgtcatttg 4734520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 268
Target Start/End: Complemental strand, 12661619 - 12661489
Alignment:
Q  139 ggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttatt--aaaa 236  Q
    |||||||||| |||||| |||||||||||||||| |||||||||||||   | |||||| |||| | ||       ||||||||||  ||||||  ||||    
T  12661619 ggccgtccctgtgaaatgggaggctcggctctctttttaaaataggtctttagtaaaat-aaaacgtaatttttttgtgtagctaaattttattaaaaaa 12661521  T
Q  237 aatcagaatcagaagagcttctaaacatgaaa 268  Q
    |||||||||||||||| |||||||||||||||    
T  12661520 aatcagaatcagaagaacttctaaacatgaaa 12661489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 13424178 - 13424129
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtc 186  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  13424178 agggccgtccctgtgaaataggaggctcggctctctttttaaaataggtc 13424129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 274
Target Start/End: Complemental strand, 931682 - 931545
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaa 236  Q
    |||| ||| |||||||||||||||| |||||||||| ||||||||||  | | | ||||| ||||||||||       ||||| ||||| |  |||  ||    
T  931682 agggtcgttcctatgaaataggaggttcggctctctttttaaaatagacctctagtaaaacaaaaatgcaagttttttgtgtaactaagttgcattggaa 931583  T
Q  237 aatcagaatcagaagagcttctaaacatgaaacgaaat 274  Q
    ||||||||| |||| | |||||||||||||||||||||    
T  931582 aatcagaattagaaaaacttctaaacatgaaacgaaat 931545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 4177435 - 4177375
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||| ||||||| |||||||||||| |||||||||| |||||||||||||||| |||||    
T  4177435 gtgtagttaagcttcattaaaaaatcataatcagaagaacttctaaacatgaaacaaaata 4177375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 17463080 - 17463020
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||| ||||||| |||||||||  ||||| |||||| ||||||||||||||||||||||    
T  17463080 gtgtagttaagcttcattaaaaaactagaattagaagaacttctaaacatgaaacgaaata 17463020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 27351584 - 27351524
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||||||| ||| ||||||||||  ||||||||||| ||||||||||||||| ||||||    
T  27351584 gtgtagctaaacttcattaaaaaattcgaatcagaagaacttctaaacatgaaaggaaata 27351524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 275
Target Start/End: Complemental strand, 33281977 - 33281849
Alignment:
Q  146 cctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatcagaat 245  Q
    ||||||||||| |||| | | |||||| ||||||||||||| | | ||||||||||| ||||       |||||| ||| ||| ||||||| |||| |||    
T  33281977 cctatgaaatatgaggtttgactctctttttaaaataggtctc-agtaaaataaaaacgcaatctttttgtgtagttaaacttcattaaaagatcataat 33281879  T
Q  246 cagaagagcttctaaacatgaaacgaaata 275  Q
    || |||| |||||||||||||||| |||||    
T  33281878 caaaagaacttctaaacatgaaacaaaata 33281849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 23069458 - 23069399
Alignment:
Q  216 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||||||||||| |||||||||||| ||| |||||| |||||||| |||||||| ||||    
T  23069458 tgtagctaagcttcattaaaaaatcaaaattagaagaacttctaaatatgaaacgtaata 23069399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 8379272 - 8379330
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaa 273  Q
    |||||| || |||| |||||||||| || ||||||||| ||||||||||||||||||||    
T  8379272 gtgtagttatgcttcattaaaaaataagtatcagaagatcttctaaacatgaaacgaaa 8379330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 13474945 - 13474880
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||  |||||||||||||||| |||||| ||||||||||| | | | ||||||||||    
T  13474945 cagggccgtccccgtgaaataggaggctcgactctctttttaaaataggcctctagtaaaataaaa 13474880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 37047097 - 37047032
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||  |||||||||||| |||||||||| ||||||||||| ||  | ||||||||||    
T  37047097 cagggccgtccccgtgaaataggaggttcggctctctttttaaaataggcccttagtaaaataaaa 37047032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 41613034 - 41612989
Alignment:
Q  139 ggccgtccctatgaaataggaggctcggctctctatttaaaatagg 184  Q
    |||||| ||||||||||||||||||| ||||||| |||||||||||    
T  41613034 ggccgttcctatgaaataggaggctctgctctctttttaaaatagg 41612989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 16061133 - 16061081
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaa 267  Q
    |||||| ||||||| ||||||||||||||||||||| |  |||||||||||||    
T  16061133 gtgtagttaagcttcattaaaaaatcagaatcagaaaaaattctaaacatgaa 16061081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 13288677 - 13288618
Alignment:
Q  216 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||||||| || |||||||||||| |||||||||| | | |||||||||||| |||||    
T  13288677 tgtagctaagtttcattaaaaaatcataatcagaagaacatttaaacatgaaacaaaata 13288618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 269
Target Start/End: Complemental strand, 16515817 - 16515686
Alignment:
Q  138 gggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgca-annnnnnngtgtagctaagctttattaaaa 236  Q
    ||||||| |||||||||||||||| |||| ||| | ||||||||||| ||| | ||||||||||| |||         |||||||||||||| || ||||    
T  16515817 gggccgttcctatgaaataggaggttcggttctatttttaaaatagg-cccgagtaaaataaaaacgcatttttttgtgtgtagctaagcttcatgaaaa 16515719  T
Q  237 aatcagaatcagaagagcttctaaacatgaaac 269  Q
    | ||||||| |||||| |||  |||||||||||    
T  16515718 agtcagaatgagaagaactttaaaacatgaaac 16515686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 10033770 - 10033732
Alignment:
Q  231 ttaaaaaatcagaatcagaagagcttctaaacatgaaac 269  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  10033770 ttaaaaaatcagaatcagaagaacttttaaacatgaaac 10033732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 17326080 - 17326026
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaac 269  Q
    ||||||||||  || ||||||||||||||||||||||| ||| |||||| |||||    
T  17326080 gtgtagctaaaattcattaaaaaatcagaatcagaagaacttttaaacacgaaac 17326026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 23069508 - 23069474
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctct 170  Q
    |||||||||||||||||||||||||||||| ||||    
T  23069508 cagggccgtccctatgaaataggaggctcgactct 23069474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 19099063 - 19099112
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggt 185  Q
    ||||||||||||| | ||||| ||||||||| ||||| ||||||||||||    
T  19099063 cagggccgtccctctaaaataagaggctcggttctctttttaaaataggt 19099112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 13656511 - 13656475
Alignment:
Q  150 tgaaataggaggctcggctctctatttaaaataggtc 186  Q
    |||||||||||| |||||||||| |||||||||||||    
T  13656511 tgaaataggaggttcggctctctttttaaaataggtc 13656475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 26377539 - 26377587
Alignment:
Q  150 tgaaataggaggctcggctctctatttaaaataggtccccaataaaata 198  Q
    |||||||||||||||| |||||| ||||||||||| ||| | |||||||    
T  26377539 tgaaataggaggctcgactctctttttaaaataggcccctagtaaaata 26377587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 36718375 - 36718443
Alignment:
Q  133 acacagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||| || | |||||||||||||  |||||| |||||||||| |||  | ||||||||||    
T  36718375 acacagggccgtctctgtaaaataggaggctcaactctctttttaaaatagatccatagtaaaataaaa 36718443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 137 - 324
Target Start/End: Complemental strand, 1366322 - 1366135
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaa 236  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | ||       ||||||||||||||||||||||    
T  1366322 agggccgtccctatgaaatagaaggctcggctctctatttaaaatagatccccaataaaataaaaacgtaatttttttgtgtagctaagctttattaaaa 1366223  T
Q  237 aatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    |||||||||||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||| ||||||||| ||||    
T  1366222 aatcagaatcagaagagcttgtaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaatttacaaacggtgtcatttg 1366135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 136 - 324
Target Start/End: Complemental strand, 25610378 - 25610192
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 235  Q
    ||||||||||||||| ||||| |||| ||| |||||||||||||||||  ||||||||||||||||||||||        ||||||||||||||||||||    
T  25610378 cagggccgtccctataaaataagaggttcgactctctatttaaaataga-ccccaataaaataaaaatgcaattttttt-tgtagctaagctttattaaa 25610281  T
Q  236 aaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    |||||||||||||||||||||| ||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||    
T  25610280 aaatcagaatcagaagagcttccaaacatgaaacgaaatacaaaaaaattaagtgaaagagagatagaatttactaacggtgtcgtttg 25610192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 137 - 324
Target Start/End: Original strand, 40001462 - 40001649
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaa 236  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||||||||  ||||||||||||||||||||       |||||| |||||||||||| ||    
T  40001462 agggccgtctctatgaaataggaggttcgactctctatttaaaataggtttccaataaaataaaaatgcaatttttttgtgtagttaagctttattagaa 40001561  T
Q  237 aatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    ||  ||||| ||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||| ||||||||    
T  40001562 aaatagaattagaagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtggaatttactaacggcgtcgtttg 40001649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 135 - 325
Target Start/End: Original strand, 26282281 - 26282479
Alignment:
Q  135 acagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaa--nnnnnnngtgtagctaagctttatt 232  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||         |||||| |||||||||||    
T  26282281 acagggccgtccctatgaaataggaggctcggctcactatttaaaataggcccccaataaaataaaaaagcaatttttttttgtgtagttaagctttatt 26282380  T
Q  233 aaaa------aatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttgt 325  Q
    ||||      ||||||||||||||||| |||||||||||||| |||||||       |||||||||||||||||||||||||||||| ||||| |||||    
T  26282381 aaaaaatcagaatcagaatcagaagagtttctaaacatgaaatgaaatacaaaaaaattaagtgaaagagaggtagaatttactaacagtgtcatttgt 26282479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 269
Target Start/End: Original strand, 36438104 - 36438234
Alignment:
Q  138 gggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaa 237  Q
    ||||||| |||| |||||||||||||||| ||| | ||||||||||| || || ||||||||||||||||       |||||||||||||| ||||||||    
T  36438104 gggccgtacctacgaaataggaggctcggttctatttttaaaatagg-cctcagtaaaataaaaatgcaatttttgtgtgtagctaagcttcattaaaaa 36438202  T
Q  238 atcagaatcagaagagcttctaaacatgaaac 269  Q
    ||||||||||||||| ||| ||||||||||||    
T  36438203 atcagaatcagaagaacttttaaacatgaaac 36438234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 273
Target Start/End: Original strand, 29730839 - 29730974
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 235  Q
    ||||| ||| |||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||||||  ||        |||||||||| || ||||||    
T  29730839 cagggtcgttcctatgaaataggaggctcgactctctttttaaaataggcccccagtaaaataaaaat--aatttttttttgtagctaagtttcattaaa 29730936  T
Q  236 aaatcagaatcagaagagcttctaaacatgaaacgaaa 273  Q
    |||||| |||||||| | ||||||||||||||||||||    
T  29730937 aaatcacaatcagaaaaacttctaaacatgaaacgaaa 29730974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 273
Target Start/End: Complemental strand, 29742108 - 29741973
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 235  Q
    ||||| ||| |||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||  |||        |||||||||| || ||||||    
T  29742108 cagggtcgttcctatgaaataggaggctcgactctctttttaaaataggcccccagtaaaataaaaa--caatttttttttgtagctaagtttcattaaa 29742011  T
Q  236 aaatcagaatcagaagagcttctaaacatgaaacgaaa 273  Q
    |||||| |||||||| | ||||||||||||||||||||    
T  29742010 aaatcacaatcagaaaaacttctaaacatgaaacgaaa 29741973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 26633598 - 26633488
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttac-taac 313  Q
    |||||||||||||| ||||||||||||||||||||||| | |||||||||||||| |||||        |||||||||||||||||  ||||||| ||||    
T  26633598 gtgtagctaagcttcattaaaaaatcagaatcagaagaacgtctaaacatgaaacaaaataaaataaaattaagtgaaagagaggtgaaatttacttaac 26633499  T
Q  314 ggtgtcgtttg 324  Q
    |||||||||||    
T  26633498 ggtgtcgtttg 26633488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 136 - 275
Target Start/End: Original strand, 44875909 - 44876046
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttatt-aa 234  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||| |         ||||||||| ||| ||| ||    
T  44875909 cagggccgtccctatgaaataggaggctcgactctctttttaaaataggtccctactaaaataaaaatgtattttatttttgtagctaaacttcattaaa 44876008  T
Q  235 aaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||||||||   |||| ||||||||||||||| ||||||    
T  44876009 aaaatcagaat---aagaacttctaaacatgaaatgaaata 44876046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 141 - 275
Target Start/End: Original strand, 40840999 - 40841133
Alignment:
Q  141 ccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaa--aa 238  Q
    |||| ||||| ||||| |||| ||| |||||  ||||||||||||| | ||||||||||||||||||       ||||||||||||||||||||||  ||    
T  40840999 ccgttcctataaaatatgaggttcgactctcattttaaaataggtcac-aataaaataaaaatgcaatttttt-gtgtagctaagctttattaaaaaaaa 40841096  T
Q  239 tcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  40841097 tcagaattagaagaacttctaaacatgaaacgaaata 40841133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 275
Target Start/End: Original strand, 773640 - 773772
Alignment:
Q  146 cctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngt---gtagctaagctttattaaaaaatcag 242  Q
    ||||||||| |||||| ||| |||||| ||||||||||| | ||||||||||||||||| ||        |   |||| ||||||| ||||||||||||     
T  773640 cctatgaaacaggaggttcgactctctttttaaaataggccgccaataaaataaaaatgtaattttttttttatgtagttaagcttcattaaaaaatcaa 773739  T
Q  243 aatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||||||| ||||||||||||||||||||||    
T  773740 aatcagaagaacttctaaacatgaaacgaaata 773772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 324
Target Start/End: Original strand, 3799593 - 3799700
Alignment:
Q  216 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaattta-ctaacg 314  Q
    ||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||||        |||||||||||||||||  |||||| ||||||    
T  3799593 tgtagctaaacttcatttaaaaatcagaatcagaagaacttctaaacatgaaacgaaata--aaaaaattaagtgaaagagaggtgaaatttacctaacg 3799690  T
Q  315 gtgtcgtttg 324  Q
    ||||||||||    
T  3799691 gtgtcgtttg 3799700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 148 - 323
Target Start/End: Complemental strand, 42312313 - 42312135
Alignment:
Q  148 tatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnn-gtgtagctaagctttattaaaaaatcagaatc 246  Q
    |||||||||| || |||| |||||| |||||||||||||| |  |||||||||||  |||        |||||| ||||||| |||||||||| ||||||    
T  42312313 tatgaaatagaagactcgactctctttttaaaataggtccactgtaaaataaaaacacaattttttgtgtgtagttaagcttcattaaaaaattagaatc 42312214  T
Q  247 agaagagcttctaaacatgaaacgaaat-acnnnnnnnttaagtgaaagagaggtagaatttac-taacggtgtcgttt 323  Q
    |||||| ||||||||||||||||||||| |        |||||||||||||||||  ||||||| ||||||||||||||    
T  42312213 agaagaacttctaaacatgaaacgaaataaaaaaaaaattaagtgaaagagaggtgaaatttacttaacggtgtcgttt 42312135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 33910379 - 33910314
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| | ||||||||||    
T  33910379 cagggccgtccctgtgaaataggaggctcggctctctttttaaaataggcccctagtaaaataaaa 33910314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 32957072 - 32956948
Alignment:
Q  146 cctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaa-nnnnnnngtgtagctaagctttattaaaaaatcagaa 244  Q
    ||||| |||||||||||||  |||||| ||||||||||| | |||||||||||||| |||||        ||| |||||||||| |||||||||||| ||    
T  32957072 cctataaaataggaggctcaactctctttttaaaataggcctccaataaaataaaactgcaattttttttgtgaagctaagcttcattaaaaaatcaaaa 32956973  T
Q  245 tcagaagagcttctaaacatgaaac 269  Q
     || |||| ||||||||||||||||    
T  32956972 ccaaaagaacttctaaacatgaaac 32956948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 28589974 - 28590034
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||||||| ||| |||||||||||||||||||||||  |||||||||||||| ||||||    
T  28589974 gtgtagctaaacttcattaaaaaatcagaatcagaagaatttctaaacatgaaatgaaata 28590034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 30739360 - 30739300
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||||||| ||| ||||||||||||||||||||||| |||||| |||||||| ||||||    
T  30739360 gtgtagctaaacttcattaaaaaatcagaatcagaagaacttctatacatgaaatgaaata 30739300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 44002762 - 44002822
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||||||||||| |||||||||| | |||||||||| ||||||||||||||| ||||||    
T  44002762 gtgtagctaagcttcattaaaaaattataatcagaagaacttctaaacatgaaatgaaata 44002822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 4100269 - 4100210
Alignment:
Q  142 cgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||||||||||||||||||| |||||||||| |||||||||| || | | ||||||||||    
T  4100269 cgtccctatgaaataggaggttcggctctctttttaaaatagatctctagtaaaataaaa 4100210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 28105848 - 28105789
Alignment:
Q  216 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||||||||||| ||||| |||| |||||||||| | ||| ||||||||||||||||||    
T  28105848 tgtagctaagcttcattaagaaattagaatcagaaaaacttttaaacatgaaacgaaata 28105789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 41852130 - 41852238
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaattta-ctaac 313  Q
    ||||||||||| || ||||| ||||||||||||||||| ||| ||||| | ||||||||||        |||||||||||||| ||  |||||| |||||    
T  41852130 gtgtagctaagtttcattaagaaatcagaatcagaagaacttttaaacgtcaaacgaaata--aaaaaattaagtgaaagagatgtgaaatttatctaac 41852227  T
Q  314 ggtgtcgtttg 324  Q
    |||||||||||    
T  41852228 ggtgtcgtttg 41852238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 41908413 - 41908352
Alignment:
Q  215 gtgtagctaagctttattaaaaaa-tcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||| |||||||| ||||||||| |||||||||||| | |||||||||||||||| |||||    
T  41908413 gtgtaactaagcttcattaaaaaaatcagaatcagaaaaacttctaaacatgaaacaaaata 41908352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 44893777 - 44893842
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||||||||| |  |||||||||||||||| |||||| |||||||||| |||  ||||||||||||    
T  44893777 cagggccgtctccgtgaaataggaggctcgactctctttttaaaatagatccttaataaaataaaa 44893842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 12251135 - 12251170
Alignment:
Q  233 aaaaaatcagaatcagaagagcttctaaacatgaaa 268  Q
    |||||||||||||||||||| |||||||||||||||    
T  12251135 aaaaaatcagaatcagaagaacttctaaacatgaaa 12251170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 40737830 - 40737939
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaattta-ctaac 313  Q
    |||||||||||||| |||||||| ||||||||| |||| ||| |||| ||||||| |||||        | |||||||||||||||  |||||| |||||    
T  40737830 gtgtagctaagcttcattaaaaagtcagaatcaaaagaacttttaaa-atgaaacaaaataaaataaaataaagtgaaagagaggtgaaatttacctaac 40737928  T
Q  314 ggtgtcgtttg 324  Q
    |||||| ||||    
T  40737929 ggtgtcatttg 40737939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 42160872 - 42160937
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||| |||||||||||| |  ||||||| |||||||||| |||  | ||||||||||    
T  42160872 cagggccgtccctgtgaaataggaggttatgctctctttttaaaatagatccttagtaaaataaaa 42160937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 6379835 - 6379899
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||| ||||||| ||||||| |||||||||||| || ||||||||||| ||  | ||||||||||    
T  6379835 agggtcgtccctgtgaaatatgaggctcggctcactttttaaaataggcccatagtaaaataaaa 6379899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 7636151 - 7636206
Alignment:
Q  215 gtgtagctaagctttatt--aaaaaatcagaatcagaagagcttctaaacatgaaa 268  Q
    |||||||||| ||| |||  |||||||||||||||||| | |||||||||||||||    
T  7636151 gtgtagctaaacttcattgaaaaaaatcagaatcagaacaacttctaaacatgaaa 7636206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 140 - 324
Target Start/End: Complemental strand, 55134519 - 55134335
Alignment:
Q  140 gccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaat 239  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||       |||||||||||||||||||||||||    
T  55134519 gccgtccctatgaaatatgaggctcggctctctatttaaaataggtccccaataaaataaaaacacaatttttttgtgtagctaagctttattaaaaaat 55134420  T
Q  240 cagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    ||| |||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| ||||| ||||    
T  55134419 caggatcaaaagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaatttactaacagtgtcatttg 55134335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 136 - 324
Target Start/End: Complemental strand, 34982539 - 34982351
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnn-gtgtagctaagctttattaa 234  Q
    ||||| ||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||        |||||| |||||||||||||    
T  34982539 cagggtcgtccctataaaataggaggctcggttctctattgaaaataggtcctcaataaaataaaaatgcaattttttttgtgtagttaagctttattaa 34982440  T
Q  235 aaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    ||| ||||||||||||||  |||||||||| |||||||||||       |||||| ||||||||||||||||||||||||| ||||||||    
T  34982439 aaa-tcagaatcagaagaaattctaaacataaaacgaaatacaaaaaaattaagtaaaagagaggtagaatttactaacggggtcgtttg 34982351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 275
Target Start/End: Original strand, 21791305 - 21791437
Alignment:
Q  141 ccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatc 240  Q
    |||| ||||||||||| |||||||| |||||| ||||||||||| | ||| ||||||| ||||||||       ||| |||||| |||||||||||| |     
T  21791305 ccgttcctatgaaatatgaggctcgactctctttttaaaatagg-ctccagtaaaatagaaatgcaatttttctgtgcagctaaactttattaaaaatt- 21791402  T
Q  241 agaatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||||||||| ||||||||||||||| ||||||    
T  21791403 agaatcagaagaacttctaaacatgaaatgaaata 21791437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 45172502 - 45172583
Alignment:
Q  242 gaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    ||||||| |||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||| ||||    
T  45172502 gaatcagcagagcttctaaacatgaaacgaaatacaaaaaaat-aagtgaaagagaggtagaatttactaacggtgtcatttg 45172583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 24449334 - 24449274
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||| |||||||| ||||||||||||||||||||||| ||| |||||||||||| |||||    
T  24449334 gtgtaactaagcttcattaaaaaatcagaatcagaagaacttttaaacatgaaacaaaata 24449274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 41038565 - 41038501
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||||| ||| | ||||||||||    
T  41038565 agggccgtcccggtgaaataggaggctcggctctctttttaaaataggcccctagtaaaataaaa 41038501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 51066061 - 51066109
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagg 184  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  51066061 cagggacgtccctatgaaataggaggctcggttctctatttaaaatagg 51066109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 268
Target Start/End: Complemental strand, 53012031 - 53011896
Alignment:
Q  134 cacagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttatt- 232  Q
    ||||||||||| ||| ||||||||||||||||||||||| |||||||||||  |  | |||||| |||| | ||       ||||||||||  || |||     
T  53012031 cacagggccgttcctgtgaaataggaggctcggctctctttttaaaataggctcatagtaaaat-aaaacgtaatttttttgtgtagctaaatttcatta 53011933  T
Q  233 -aaaaaatcagaatcagaagagcttctaaacatgaaa 268  Q
     |||||||||||||||||||| |||||||||||||||    
T  53011932 aaaaaaatcagaatcagaagaacttctaaacatgaaa 53011896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 268
Target Start/End: Original strand, 32130544 - 32130673
Alignment:
Q  141 ccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttatt---aaaaa 237  Q
    |||||||| |||||||||||||||||||||   ||||||||||||||  | |||||| |||| | ||       ||||||||||  ||||||   |||||    
T  32130544 ccgtccctgtgaaataggaggctcggctcttcttttaaaataggtccttagtaaaat-aaaacgtaatttttttgtgtagctaaattttattaaaaaaaa 32130642  T
Q  238 atcagaatcagaagagcttctaaacatgaaa 268  Q
    ||||||||||||||| |||||||||||||||    
T  32130643 atcagaatcagaagaacttctaaacatgaaa 32130673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 9925332 - 9925295
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaaga 252  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9925332 gtgtagctaagctttattaaaaaatcagaatcagaaga 9925295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 29221377 - 29221438
Alignment:
Q  140 gccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||| | | | ||||||||||    
T  29221377 gccgtccctgtgaaataggaggctcggctctctttttaaaataggcctctagtaaaataaaa 29221438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 11681492 - 11681556
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||||||||||  |||||||||||||||| |||||| ||||||||||| ||| | ||||||||||    
T  11681492 agggccgtccccgtgaaataggaggctcgactctctttttaaaataggcccctagtaaaataaaa 11681556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 11689771 - 11689835
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||||||||||  |||||||||||||||| |||||| ||||||||||| ||| | ||||||||||    
T  11689771 agggccgtccccgtgaaataggaggctcgactctctttttaaaataggcccctagtaaaataaaa 11689835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 5545563 - 5545504
Alignment:
Q  216 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||||||| || | |||||||  |||||||||||| ||||||||||||||||||||||    
T  5545563 tgtagctaagattcagtaaaaaaatagaatcagaagaacttctaaacatgaaacgaaata 5545504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 268
Target Start/End: Complemental strand, 27632704 - 27632579
Alignment:
Q  145 ccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttatt---aaaaaatca 241  Q
    |||| ||||||||||||||||||||||  ||||||||||| ||| | |||||| |||| | ||       |||||| ||| ||| |||   |||||||||    
T  27632704 ccctgtgaaataggaggctcggctctcattttaaaataggcccctagtaaaat-aaaacgtaatttttttgtgtagttaaacttcattaaaaaaaaatca 27632606  T
Q  242 gaatcagaagagcttctaaacatgaaa 268  Q
    ||||||||||| |||||||||||||||    
T  27632605 gaatcagaagaacttctaaacatgaaa 27632579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 35653809 - 35653919
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaattta-ctaac 313  Q
    |||||| ||||||| |||||||| || ||||||||||| ||| |||||||||||| ||| |        |||||||||||||||||  |||||| |||||    
T  35653809 gtgtagttaagcttcattaaaaagtccgaatcagaagaacttttaaacatgaaacaaaacaaaataaaattaagtgaaagagaggtgaaatttatctaac 35653908  T
Q  314 ggtgtcgtttg 324  Q
    |||||| ||||    
T  35653909 ggtgtcatttg 35653919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 23256897 - 23256847
Alignment:
Q  150 tgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||||||||||||| ||||||||||| ||| | ||||||||||    
T  23256897 tgaaataggaggctcggctctctttttaaaatagg-ccctagtaaaataaaa 23256847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 9607324 - 9607258
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaa 202  Q
    |||||||||||||  | ||| |||||||||||||||   | |||||||||||| |||||||||||||    
T  9607324 cagggccgtccctgagtaattggaggctcggctctcatataaaaataggtccctaataaaataaaaa 9607258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 19661695 - 19661630
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||||||||||   ||||||||||||||| ||||||| |||||||||||  || | ||||||||||    
T  19661695 cagggccgtcctagtgaaataggaggctctgctctctttttaaaataggctcctagtaaaataaaa 19661630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 26328858 - 26328919
Alignment:
Q  215 gtgtagctaagctttattaaaa-aatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||||||| ||| ||||||| ||||||||| ||||||  |||||||||||||| ||||||    
T  26328858 gtgtagctaaacttcattaaaaaaatcagaattagaagaatttctaaacatgaaaagaaata 26328919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 10575380 - 10575412
Alignment:
Q  243 aatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||||||| ||||||||||||||||||||||    
T  10575380 aatcagaagaacttctaaacatgaaacgaaata 10575412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 23425994 - 23426049
Alignment:
Q  215 gtgtagctaagctttattaaaaaa--tcagaatcagaagagcttctaaacatgaaa 268  Q
    ||||||||||  ||||||||||||  | |||||||||||| |||||||||||||||    
T  23425994 gtgtagctaaattttattaaaaaaaattagaatcagaagaacttctaaacatgaaa 23426049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 141 - 324
Target Start/End: Original strand, 34523709 - 34523889
Alignment:
Q  141 ccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatc 240  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||       |||||||||||||||||| |||||||    
T  34523709 ccgtccctatgaaataggaggctcggctctctatttaaaataggcccccaataaaataaaaacgcaatttttttgtgtagctaagctttatt-aaaaatc 34523807  T
Q  241 agaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||  |||||||||||||| |||||||||||||||    
T  34523808 agaatcagaagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaa--agaggtagaatttaataacggtgtcgtttg 34523889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 140 - 324
Target Start/End: Complemental strand, 12531871 - 12531685
Alignment:
Q  140 gccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgt--agctaagctttattaaaaa 237  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||  |||       ||||  |||||||||||||||||||    
T  12531871 gccgtccctatgaaataggaggcttggctctctatttaaaataggctcccaataaaataaaaacacaatttttttgtgtgtagctaagctttattaaaaa 12531772  T
Q  238 atcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    |||||||| |||||||||||||||||||||||||||||        |||||||||||||||||| ||||||||||||| ||||||||    
T  12531771 atcagaataagaagagcttctaaacatgaaacgaaatataaaaaaattaagtgaaagagaggtataatttactaacggcgtcgtttg 12531685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 136 - 324
Target Start/End: Original strand, 39697695 - 39697876
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaa-nnnnnnngtgtagctaagctttattaa 234  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||| |||||||   ||||||||||||        |||||||||     ||||||    
T  39697695 cagggccgtccctatgaaataggaggcttgggtctctatttaaaataggcccccaat---ataaaaatgcaattttttttgtgtagcta-----tattaa 39697786  T
Q  235 aaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    ||||||||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||| ||||| ||||    
T  39697787 aaaatcagaatcagaagagtttctaaacatgaaacgaaatacaaaaaaaataagtgaaagagaggtagaatttactaacagtgtcatttg 39697876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 324
Target Start/End: Original strand, 23567033 - 23567212
Alignment:
Q  142 cgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaa--nnnnnnngtgtagctaagctttattaaaaaat 239  Q
    ||||| ||||||||||| |||||  |||||||||||||||| | ||||||||||||||||| ||||         |||||  || ||||||||||||||     
T  23567033 cgtccttatgaaatagg-ggctcaactctctatttaaaataagcccccaataaaataaaaacgcaatttttttttgtgtaattatgctttattaaaaaaa 23567131  T
Q  240 cagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
     |||||   ||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||| ||||||||    
T  23567132 tagaat---aagagcttctaaacatgaaacgaaatac-aaaaaattaagtgaaagagtggtagaatttactaacggcgtcgtttg 23567212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 3574849 - 3574910
Alignment:
Q  140 gccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| || ||||||||||    
T  3574849 gccgttcctatgaaataggaggctcgactctctatttaaaataggtcctcagtaaaataaaa 3574910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 13585620 - 13585555
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||||||| ||| | ||||||||||    
T  13585620 cagggccgtccctgtgaaataggaggctcgactctctttttaaaataggcccctagtaaaataaaa 13585555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 35875134 - 35875074
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||| |||||||| ||||||||||||||||||||||| ||| |||||||||||| |||||    
T  35875134 gtgtaactaagcttcattaaaaaatcagaatcagaagaacttttaaacatgaaacaaaata 35875074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 33452993 - 33452934
Alignment:
Q  216 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||||||| ||| |||||||||||| ||| |||||| ||||||||||||||||||||||    
T  33452993 tgtagctaaacttcattaaaaaatcataattagaagaacttctaaacatgaaacgaaata 33452934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 44664360 - 44664418
Alignment:
Q  143 gtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||| | ||||||||||    
T  44664360 gtccctgtgaaataggtggctcggctctctttttaaaataggtccctagtaaaataaaa 44664418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 3445847 - 3445782
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||| |||||||| |||||||||||||||| |||||| ||||||||||| ||| | ||||||||||    
T  3445847 caggaccgtccctgtgaaataggaggctcgactctctttttaaaataggcccctagtaaaataaaa 3445782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 324
Target Start/End: Original strand, 32098007 - 32098116
Alignment:
Q  216 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttac-taacg 314  Q
    |||| |||||| | |||||||||||  ||||||| || ||||||||||||||||||||||        |||||||||||||| ||  ||||||| |||||    
T  32098007 tgtaactaagcatcattaaaaaatcgaaatcagatgaacttctaaacatgaaacgaaataaaaaaaaattaagtgaaagagaagtgaaatttacgtaacg 32098106  T
Q  315 gtgtcgtttg 324  Q
    ||||||||||    
T  32098107 gtgtcgtttg 32098116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 12268754 - 12268813
Alignment:
Q  216 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||| ||||||| |||||||||||| |||||||| | || |||||||||||||||||||    
T  12268754 tgtagataagcttcattaaaaaatcataatcagaataactactaaacatgaaacgaaata 12268813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 18420355 - 18420402
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 183  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  18420355 cagggtcgtccctgtgaaataggaggctcggctctctttttaaaatag 18420402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 42076344 - 42076290
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaac 269  Q
    |||||| ||||||| |||||||||||||||||| |||| ||| ||||||||||||    
T  42076344 gtgtagataagcttcattaaaaaatcagaatcaaaagaacttttaaacatgaaac 42076290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 7858398 - 7858334
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||||||||||  || ||||||||||||| |||||| ||||||||||| ||| | ||||||||||    
T  7858398 agggccgtccccgtggaataggaggctcgactctctttttaaaataggcccctagtaaaataaaa 7858334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 42951549 - 42951593
Alignment:
Q  141 ccgtccctatgaaataggaggctcggctctctatttaaaataggt 185  Q
    |||||| | ||||||||||||||||||||||| ||||||||||||    
T  42951549 ccgtccttgtgaaataggaggctcggctctctttttaaaataggt 42951593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 13585515 - 13585480
Alignment:
Q  233 aaaaaatcagaatcagaagagcttctaaacatgaaa 268  Q
    |||||||||||||||||||| |||||||||||||||    
T  13585515 aaaaaatcagaatcagaagaacttctaaacatgaaa 13585480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 30915114 - 30915173
Alignment:
Q  216 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||| |||| || |||||||||||| |||||||||| | |||||| |||||||||||||    
T  30915114 tgtagttaagtttcattaaaaaatcataatcagaagaacgtctaaaaatgaaacgaaata 30915173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 3471901 - 3471867
Alignment:
Q  148 tatgaaataggaggctcggctctctatttaaaata 182  Q
    ||||||||||||||||||||||||| |||||||||    
T  3471901 tatgaaataggaggctcggctctctttttaaaata 3471867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 268
Target Start/End: Original strand, 43926076 - 43926206
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaa 236  Q
    ||||||||| |  |||||||||| |||||||||||| ||||||||||| |   | ||||||||||  | ||       ||||||||||  || | |||||    
T  43926076 agggccgtctccgtgaaataggaagctcggctctctttttaaaataggcctttagtaaaataaaac-gtaatttttttgtgtagctaaatttcactaaaa 43926174  T
Q  237 aatcagaatcagaagagcttctaaacatgaaa 268  Q
    ||||||||||||||||  ||||||||||||||    
T  43926175 aatcagaatcagaagaagttctaaacatgaaa 43926206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 18112424 - 18112387
Alignment:
Q  150 tgaaataggaggctcggctctctatttaaaataggtcc 187  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  18112424 tgaaataggaggttcggctctctttttaaaataggtcc 18112387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 27074788 - 27074723
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||| |||||| | ||||||| ||||||||||| ||| ||||||||||||||  | ||||||||||    
T  27074788 caggaccgtccttgtgaaatatgaggctcggctatctttttaaaataggtccatagtaaaataaaa 27074723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 136 - 324
Target Start/End: Original strand, 43905603 - 43905791
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 235  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||| ||||       |||| | ||||||||| ||||    
T  43905603 cagggtcgtccctatgaaataggaggctcgactctctatttaaaatagacccccaataaaataaaaacgcaatttttttgtgttgttaagctttactaaa 43905702  T
Q  236 aaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    |||  ||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||    
T  43905703 aaaatagaatcataagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaatttactaacggtgtcatttg 43905791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 135 - 324
Target Start/End: Original strand, 48626778 - 48626968
Alignment:
Q  135 acagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaa 234  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||| |  |||||||||||||| ||||       |||||| ||| |||||| ||    
T  48626778 acaggaccgtccctatgaaataggaggctcggttctctatttaaaataggccttcaataaaataaaaacgcaatttttttgtgtagttaaactttataaa 48626877  T
Q  235 aaaatcagaatcagaagagcttctaaacatgaaacgaaatac-nnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    ||||| ||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||| ||||| ||||    
T  48626878 aaaattagaatcagaagagcttctaaacatgaaacgaaatacaaaaaaaaataagtgaaagagaggtagaatttactaacagtgtcatttg 48626968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 38251062 - 38251130
Alignment:
Q  19 gaacaaacaaaagagcaaaacaactaccaagaaaagttgttacttctgtcacaaggaaggccacttcag 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251062 gaacaaacaaaagagcaaaacaactaccaagaaaagttgttacttctgtcacaaggaaggccacttcag 38251130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 146 - 275
Target Start/End: Original strand, 1649601 - 1649730
Alignment:
Q  146 cctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatcagaat 245  Q
    |||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||  |||       ||||| | |||||| ||||||||||| || |    
T  1649601 cctatgaaatgggaggctcggctctctatttaaaatagttccccagtaaaataaaaacacaatttgtttgtgtaccgaagcttcattaaaaaatcggagt 1649700  T
Q  246 cagaagagcttctaaacatgaaacgaaata 275  Q
     | |||| ||||||||||||||||||||||    
T  1649701 tataagaacttctaaacatgaaacgaaata 1649730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 139 - 324
Target Start/End: Complemental strand, 46905053 - 46904867
Alignment:
Q  139 ggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnn-gtgtagctaagctttattaaaaa 237  Q
    |||||| ||||||||||||||||||||| ||| | |||||||||||| || | |||||||||||| |||        ||||||| |||||| ||||||||    
T  46905053 ggccgttcctatgaaataggaggctcggttctatttttaaaataggttcc-agtaaaataaaaattcaattttttatgtgtagcgaagcttcattaaaaa 46904955  T
Q  238 atcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaattta-ctaacggtgtcgtttg 324  Q
    |||||||| |||||| ||| |||||||||||| ||| |        |||||||||||||||||  |||||| ||||||||||||||||    
T  46904954 atcagaataagaagaacttttaaacatgaaacaaaacaaaataaaattaagtgaaagagaggtgaaatttacctaacggtgtcgtttg 46904867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 137 - 275
Target Start/End: Complemental strand, 7767379 - 7767241
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnn-gtgtagctaagctttattaaa 235  Q
    |||||||| ||||||||||||||||||||| ||| | ||||||||||| ||| | ||| ||||||| |||         |||||||||||||| ||||||    
T  7767379 agggccgttcctatgaaataggaggctcggttctatttttaaaatagg-cccaagtaagataaaaacgcatttttttgtgtgtagctaagcttcattaaa 7767281  T
Q  236 aaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    || |||||||||||||| ||| |||||||||||| |||||    
T  7767280 aagtcagaatcagaagaacttttaaacatgaaacaaaata 7767241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 268
Target Start/End: Original strand, 25598833 - 25598965
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttatt--aa 234  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||||||||   | |||||| |||| | ||       |||||||||| ||| |||  ||    
T  25598833 agggccgttcctataaaataggaggctcggctctctttttaaaataggtctttagtaaaat-aaaacgtaatttttttgtgtagctaaacttcattaaaa 25598931  T
Q  235 aaaatcagaatcagaagagcttctaaacatgaaa 268  Q
    |||||||||||||||||| |||||||||||||||    
T  25598932 aaaatcagaatcagaagaacttctaaacatgaaa 25598965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 28132484 - 28132549
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| | ||||||||||    
T  28132484 cagggccgtccctgtgaaataggaggctcggctctctttttaaaataggcccctagtaaaataaaa 28132549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 268
Target Start/End: Complemental strand, 21596623 - 21596516
Alignment:
Q  161 gctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaaatcagaatcagaagagcttctaa 260  Q
    |||||| ||||| ||||||||| | ||| ||||||||||||||| ||        | ||||||||||| |||||||||||||||||| |||| |||||||    
T  21596623 gctcggttctctttttaaaatatgcccctaataaaataaaaatgtaatttttttttatagctaagcttcattaaaaaatcagaatcaaaagaacttctaa 21596524  T
Q  261 acatgaaa 268  Q
    ||||||||    
T  21596523 acatgaaa 21596516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 275
Target Start/End: Original strand, 40151883 - 40152019
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaa 236  Q
    |||| ||| |||||||||||||||||||| |||||| ||||||||||   |||  ||||||||||||  ||       |||||| ||||||| |||||||    
T  40151883 agggtcgttcctatgaaataggaggctcgactctctttttaaaatagactccc--taaaataaaaatataattgttttgtgtagttaagcttcattaaaa 40151980  T
Q  237 aatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||||||||| || | ||| |||| |||||||||||||    
T  40151981 aatcagaatcataaaaacttttaaatatgaaacgaaata 40152019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 135 - 324
Target Start/End: Complemental strand, 27303502 - 27303310
Alignment:
Q  135 acagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnn---gtgtagctaagctttat 231  Q
    |||||||||| || |||||||||||||||||| ||| | |||||||||||| |  | |||||||||||||| |          || ||| ||||||| ||    
T  27303502 acagggccgttccaatgaaataggaggctcggttctatttttaaaataggttct-agtaaaataaaaatgcgattttttttttgtatagttaagcttcat 27303404  T
Q  232 taaaaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaattta-ctaacggtgtcgtttg 324  Q
    ||||||||||||||||||||| ||| |||||||||||| ||| |        |||||||||||||||||  |||||| |||| |||||||||||    
T  27303403 taaaaaatcagaatcagaagaacttttaaacatgaaacaaaacaaaataaaattaagtgaaagagaggtgaaatttacctaatggtgtcgtttg 27303310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 268
Target Start/End: Complemental strand, 13401772 - 13401641
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 235  Q
    ||||||||||||| | |||||||||||||| |||||| ||||||||||||||  | |||||| |||||| ||       |||||| ||| ||| ||||||    
T  13401772 cagggccgtccctgtaaaataggaggctcgactctctttttaaaataggtccttagtaaaat-aaaatgtaacttttttgtgtagttaaacttcattaaa 13401674  T
Q  236 aaatcagaatcagaagagcttctaaacatgaaa 268  Q
    |||    |||||||||| |||||||||||||||    
T  13401673 aaaatgaaatcagaagaacttctaaacatgaaa 13401641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 324
Target Start/End: Complemental strand, 51147252 - 51147062
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaa--nnnnnnngtgtagctaagctttatta 233  Q
    ||||||||| ||||||||||||||||||||| ||| | ||||||||| | |||||||||||| |||||| ||         | |||| ||||||| ||||    
T  51147252 cagggccgttcctatgaaataggaggctcggttctatttttaaaata-gaccccaataaaattaaaatgtaatttttttttgcgtaggtaagcttcatta 51147154  T
Q  234 aaaaatcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaattta-ctaacggtgtcgtttg 324  Q
    |||||||| |||||||||| ||  |||||| ||||| ||| |        | ||||||||||||| || |||||| ||||||||||||||||    
T  51147153 aaaaatcataatcagaagaactcttaaacacgaaacaaaacaaaataaaatgaagtgaaagagagataaaatttacctaacggtgtcgtttg 51147062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 6715753 - 6715688
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||| |||  | ||||||||||    
T  6715753 cagggccgtccccgtgaaataggaggctcggctctctttttaaaatagatccttagtaaaataaaa 6715688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 52654873 - 52654937
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||||||| ||| |||||||||||||||  |||||| ||||||||||||||| | ||||||||||    
T  52654873 agggccgttcctgtgaaataggaggctcaactctctttttaaaataggtccctagtaaaataaaa 52654937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 21784531 - 21784580
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtc 186  Q
    |||||||||||| |||||||||||| ||| |||||| |||||||||||||    
T  21784531 agggccgtccctctgaaataggaggttcgactctctttttaaaataggtc 21784580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 46791451 - 46791509
Alignment:
Q  141 ccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||||||| ||||||||||||||||||||||  ||||||||||| ||| | ||||||||||    
T  46791451 ccgtccctgtgaaataggaggctcggctctc--tttaaaataggcccctagtaaaataaaa 46791509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 27729529 - 27729585
Alignment:
Q  145 ccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||| |||||||||||| |||||| ||| ||||||||||||||| | ||||||||||    
T  27729529 ccctgtgaaataggaggttcggctgtctttttaaaataggtccctagtaaaataaaa 27729585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 2669706 - 2669773
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatg 204  Q
    ||||||||||||||  | | ||||||||||||||| ||  ||||||| |||| |||||||||||||||    
T  2669706 agggccgtccctatatatttggaggctcggctctcaatcaaaaatagatccctaataaaataaaaatg 2669773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 20762364 - 20762317
Alignment:
Q  140 gccgtccctatgaaataggaggctcggctctctatttaaaataggtcc 187  Q
    ||||||||| |||||||||||| |||||| ||| ||||||||||||||    
T  20762364 gccgtccctgtgaaataggaggttcggctttctttttaaaataggtcc 20762317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 19965706 - 19965767
Alignment:
Q  215 gtgtagctaagctttattaaaaa-atcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||||||  |||| |||||||| |||| |||||||||| ||||||||||||||| ||||||    
T  19965706 gtgtagctttgcttcattaaaaatatcaaaatcagaagaacttctaaacatgaaaggaaata 19965767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 51939307 - 51939352
Alignment:
Q  139 ggccgtccctatgaaataggaggctcggctctctatttaaaatagg 184  Q
    |||||||||| |||||||| ||||||| |||||| |||||||||||    
T  51939307 ggccgtccctgtgaaatagtaggctcgactctctttttaaaatagg 51939352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 138 - 324
Target Start/End: Complemental strand, 12971718 - 12971532
Alignment:
Q  138 gggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaaaa 237  Q
    |||| |||||||| |||||||||||||||||||||||||||||||   ||| ||||||||||||| ||||       || ||||||| ||||||||||||    
T  12971718 gggctgtccctataaaataggaggctcggctctctatttaaaataaacccctaataaaataaaaacgcaatttttttgtatagctaaactttattaaaaa 12971619  T
Q  238 atcagaatcagaagagcttctaaacatgaaacgaaatacnnnnnnnttaagtgaaagagaggtagaatttactaacggtgtcgtttg 324  Q
    |||||||||||   ||||||| |||||||||||||||||        ||||||||||| ||||||||||||||||||| ||||||||    
T  12971618 atcagaatcagtttagcttcttaacatgaaacgaaatacaaaaaaaataagtgaaagataggtagaatttactaacggagtcgtttg 12971532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 50371369 - 50371309
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||    
T  50371369 gtgtagctaagcttcattaaaaaatcagaatcataagaacttctaaacatgaaacgaaata 50371309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 275
Target Start/End: Original strand, 26486125 - 26486264
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnn-gtgtagctaagctttattaa 234  Q
    ||||||||| ||||| ||||||||||||||| ||| | || |||||||| ||| | |||||||||||||||         |||||||||||||| ||| |    
T  26486125 cagggccgttcctataaaataggaggctcggttctattttcaaaatagg-cccgagtaaaataaaaatgcatttttttgtgtgtagctaagcttcattta 26486223  T
Q  235 aaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||||||||||||||| ||| |||||||||||| |||||    
T  26486224 aaaatcagaatcagaagaacttttaaacatgaaacaaaata 26486264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 136 - 268
Target Start/End: Complemental strand, 25930918 - 25930784
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaaa 235  Q
    ||||| ||||||| | |||||||| ||||| |||||| || |||||||| ||| ||||||||||||| | ||       |||||||||| ||| ||||||    
T  25930918 cagggtcgtccctgtaaaataggaagctcgactctcttttgaaaataggcccctaataaaataaaaacgtaatttttttgtgtagctaaacttcattaaa 25930819  T
Q  236 aaa--tcagaatcagaagagcttctaaacatgaaa 268  Q
    |||  ||||||||||||||||||||||| ||||||    
T  25930818 aaaaatcagaatcagaagagcttctaaatatgaaa 25930784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 51109848 - 51109913
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| | ||||||||||    
T  51109848 cagggccgtccctgtgaaataggaggctcggctctctttttaaaataggcccctagtaaaataaaa 51109913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 269
Target Start/End: Original strand, 37873506 - 37873639
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaa-nnnnnnngtgtagctaagctttattaa 234  Q
    |||||||||  |||||||||||||||||||  ||| | ||||||||||| ||||| ||||||||||||| ||        |||||| ||||||| |||||    
T  37873506 cagggccgtttctatgaaataggaggctcgattctatttttaaaatagg-ccccagtaaaataaaaatgtaattttttgtgtgtagttaagcttcattaa 37873604  T
Q  235 aaaatcagaatcagaagagcttctaaacatgaaac 269  Q
    ||||| ||||||| |||| ||| ||||||||||||    
T  37873605 aaaattagaatcataagaacttttaaacatgaaac 37873639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 27703363 - 27703423
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||| |||||||| ||||||||||||||||| || | ||||||||||||||||||||||    
T  27703363 gtgtagttaagctttgttaaaaaatcagaatcataataacttctaaacatgaaacgaaata 27703423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 39080451 - 39080510
Alignment:
Q  216 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||||||||||| ||| |||||||||||||| |||| ||||||||||||||| ||||||    
T  39080451 tgtagctaagcttcattgaaaaatcagaatcataagaacttctaaacatgaaatgaaata 39080510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 42740419 - 42740354
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaa 202  Q
    ||||||||| ||||||||||||||||||||| ||| | ||||||||||| ||||| |||||||||||    
T  42740419 cagggccgttcctatgaaataggaggctcggttctatttttaaaatagg-ccccagtaaaataaaaa 42740354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 1269788 - 1269727
Alignment:
Q  215 gtgtagctaagcttt-attaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    |||||| |||||||| ||||||||||||||||||  ||| ||||||||||||||||||||||    
T  1269788 gtgtagttaagcttttattaaaaaatcagaatcaatagaacttctaaacatgaaacgaaata 1269727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 15441516 - 15441463
Alignment:
Q  222 taagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||    
T  15441516 taagcttcattaaaaaatcaaaatcagaagaacttctaaacatgaaacggaata 15441463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 20905035 - 20905100
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||| ||||||| |||||||||||||||| |||||| ||||||||||||||| | ||| ||||||    
T  20905035 cagggtcgtccctgtgaaataggaggctcgactctctttttaaaataggtccctagtaagataaaa 20905100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 9777649 - 9777590
Alignment:
Q  216 tgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||||||| ||| |||||||||||||||| |||| | |||||||||||||||| |||||    
T  9777649 tgtagctaaacttcattaaaaaatcagaattagaataacttctaaacatgaaactaaata 9777590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 268
Target Start/End: Original strand, 30004656 - 30004790
Alignment:
Q  135 acagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttattaa 234  Q
    ||||| |||||| | | ||||||||||||||||||||| ||||||||||| ||  | |||||| |||| | ||       |||||||||| ||| ||| |    
T  30004656 acaggaccgtccatgtaaaataggaggctcggctctctttttaaaataggcccatagtaaaat-aaaacgtaatttttttgtgtagctaaacttcattga 30004754  T
Q  235 a--aaatcagaatcagaagagcttctaaacatgaaa 268  Q
    |  ||||||||||||||||| |||||||||||||||    
T  30004755 attaaatcagaatcagaagaacttctaaacatgaaa 30004790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 6151037 - 6150991
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaata 182  Q
    ||||||||||||| |||||||||||||||| |||||| |||||||||    
T  6151037 cagggccgtccctgtgaaataggaggctcgactctctttttaaaata 6150991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 18127688 - 18127753
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||| |||||||||||| |||| ||||| || |||||||||||  | ||||||||||    
T  18127688 cagggccgtccctgtgaaataggaggttcggttctcttttcaaaataggtccttagtaaaataaaa 18127753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 28885424 - 28885485
Alignment:
Q  140 gccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||| |||||||||||||||||| |||||| |||||||||| | || | ||||||||||    
T  28885424 gccgtccatatgaaataggaggctcgactctctttttaaaatagatacctagtaaaataaaa 28885485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 48722119 - 48722180
Alignment:
Q  140 gccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||| | |||||||||||||||| |||||| ||||||||||||||  | ||||||||||    
T  48722119 gccgtccgtgtgaaataggaggctcgactctctttttaaaataggtccatagtaaaataaaa 48722180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 323 - 259
Alignment:
Q  137 agggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||| || ||| ||||||||||||||||| ||||| |||||||||||  |||| ||||||||||    
T  323 agggctgttcctgtgaaataggaggctcggttctctttttaaaataggctcccagtaaaataaaa 259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 20470928 - 20470884
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaa 180  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||    
T  20470928 cagggccgtccccgtgaaataggaggctcggctctctttttaaaa 20470884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 44836555 - 44836614
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaacatgaaacgaaata 275  Q
    ||||||||||| ||||||||||||| ||||||| |||| ||| |||||||||||| |||||    
T  44836555 gtgtagctaag-tttattaaaaaattagaatcataagaacttttaaacatgaaacaaaata 44836614  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 14084547 - 14084582
Alignment:
Q  233 aaaaaatcagaatcagaagagcttctaaacatgaaa 268  Q
    |||||||||||||||||||| |||||||||||||||    
T  14084547 aaaaaatcagaatcagaagaacttctaaacatgaaa 14084582  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 30899876 - 30899841
Alignment:
Q  233 aaaaaatcagaatcagaagagcttctaaacatgaaa 268  Q
    |||||||||||||||||||| |||||||||||||||    
T  30899876 aaaaaatcagaatcagaagaacttctaaacatgaaa 30899841  T

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Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 48722214 - 48722249
Alignment:
Q  233 aaaaaatcagaatcagaagagcttctaaacatgaaa 268  Q
    |||||||||||||||||||| |||||||||||||||    
T  48722214 aaaaaatcagaatcagaagaacttctaaacatgaaa 48722249  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 17487028 - 17487093
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||| ||||||  |||||||||||||||| |||||| ||||||||||| ||  | ||||||||||    
T  17487028 cagggtcgtccccgtgaaataggaggctcgactctctttttaaaataggcccttagtaaaataaaa 17487093  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 29207842 - 29207907
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    |||| |||| ||| |||||||||||||||| |||||| | ||||||||||||  | ||||||||||    
T  29207842 caggaccgttcctgtgaaataggaggctcgactctctttctaaaataggtccatagtaaaataaaa 29207907  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 24183764 - 24183832
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatg 204  Q
    |||||||||||||||  | | ||||||||||||||| ||  |||||||| | | |||||||||||||||    
T  24183764 cagggccgtccctatatatttggaggctcggctctcaatcaaaaataggcctctaataaaataaaaatg 24183832  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 24557037 - 24556989
Alignment:
Q  215 gtgtagctaagctttattaaaaaatcagaatcagaagagcttctaaaca 263  Q
    |||||||||||||| ||| |||||| |||||||||||| ||| ||||||    
T  24557037 gtgtagctaagcttcattgaaaaattagaatcagaagaacttttaaaca 24556989  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 30899972 - 30899932
Alignment:
Q  143 gtccctatgaaataggaggctcggctctctatttaaaatag 183  Q
    |||||| |||||||||||| |||||||||| ||||||||||    
T  30899972 gtccctgtgaaataggaggttcggctctctttttaaaatag 30899932  T

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Target: scaffold0034 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 99222 - 99092
Alignment:
Q  146 cctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngt--gtagctaagctttattaaaaaatcaga 243  Q
    |||||||||||||||||||   ||||| ||||||||||| || || ||||||||||||||||        |  |||||||  ||| ||||||||||||||    
T  99222 cctatgaaataggaggctcaaatctctttttaaaataggccctcagtaaaataaaaatgcaatttttttttttgtagctagccttcattaaaaaatcaga 99123  T
Q  244 atcagaagagcttctaaacatgaaacgaaat 274  Q
    ||||||||| |||||||||||||||||||||    
T  99122 atcagaagaacttctaaacatgaaacgaaat 99092  T

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Target: scaffold0181 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 16897 - 16948
Alignment:
Q  150 tgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaa 201  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||    
T  16897 tgaaataggaggctcggctctctttttaaaataggcccctaataaaataaaa 16948  T

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Target: scaffold0564 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 268
Target Start/End: Complemental strand, 1376 - 1243
Alignment:
Q  136 cagggccgtccctatgaaataggaggctcggctctctatttaaaataggtccccaataaaataaaaatgcaannnnnnngtgtagctaagctttatt--a 233  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||| || || | |||||| |||| | ||       ||||||||||  || |||  |    
T  1376 cagggccgtccccgtgaaataggaggctcggctctctttttaaaataagttcctagtaaaat-aaaacgtaatttttttgtgtagctaaatttcattaaa 1278  T
Q  234 aaaaatcagaatcagaagagcttctaaacatgaaa 268  Q
    |||||||||||||||||||  ||||||||||||||    
T  1277 aaaaatcagaatcagaagaagttctaaacatgaaa 1243  T

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Target: scaffold0035 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 22633 - 22688
Alignment:
Q  215 gtgtagctaagctttattaaaa--aatcagaatcagaagagcttctaaacatgaaa 268  Q
    ||||||||||  ||||||||||  |||||||||||||||| |||||||||||||||    
T  22633 gtgtagctaaattttattaaaaaaaatcagaatcagaagaacttctaaacatgaaa 22688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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