View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_41 (Length: 337)
Name: NF16912_low_41
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 37840979 - 37840673
Alignment:
| Q |
20 |
aaaaccaccatgcaagaaggaaacaatcaacaagagtttgataattctactactacaacaaattctagtcatttagacaaggttgcagcataataagaag |
119 |
Q |
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| T |
37840979 |
aaaaccaccatgcaagaaggaaacaatcaacaagagtttgataattctactactacaacaaattctagtcatttagacaaggttgcagcataataagaag |
37840880 |
T |
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| Q |
120 |
aacttaccttgtcaggtcacaaatattttagagctgatgattgagattgttttgttctttgaggtgcttactttgaaactaagctatcttgaaggaatga |
219 |
Q |
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| T |
37840879 |
aacttaccttgtcaggtcacaaatattttagagctgatgattgagattgttttgttctttgaggtgcttactttgaaactaagctatcttgaaggaatga |
37840780 |
T |
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| Q |
220 |
caaggaaattggatggtaaactcttagaatttctgtgaaacttctgataaaggaaattacaaggaaagagaccccaaagttatagggtgtatgaatgagc |
319 |
Q |
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| T |
37840779 |
caaggaaattggatggtaaactcttagaatttctgtgaaacttctgataaaggaaattacaaggaaagagaccacaaagttatagggtttatgaatgaca |
37840680 |
T |
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| Q |
320 |
atatttt |
326 |
Q |
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||||||| |
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| T |
37840679 |
atatttt |
37840673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 47 - 199
Target Start/End: Complemental strand, 37821384 - 37821225
Alignment:
| Q |
47 |
caacaagagtttgataattctactactacaacaaattctagtcatttagacaaggttgcagcataataagaagaacttaccttgtcaggt----cacaaa |
142 |
Q |
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| T |
37821384 |
caacaagattgtgataattttactgctacaactaattctagtcatttagacaaggttgcaacagaataagaagcacttaccttgtcaagtttgagggaaa |
37821285 |
T |
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| Q |
143 |
tattttagagctgatgat---tgagattgttttgttctttgaggtgcttactttgaaact |
199 |
Q |
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| T |
37821284 |
gattttggagctgatgatgaatgagatttttttgttctttgaggtgtcttctttgaaact |
37821225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 37829626 - 37829540
Alignment:
| Q |
47 |
caacaagagtttgataattctactactacaacaaattctagtcatttagacaaggttgcagcataataagaagaacttaccttgtca |
133 |
Q |
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| T |
37829626 |
caacaagattgtgataattttactgctacaactaattctagtcatttagacaaggttgcaacagaataagaagcacttaccttgtca |
37829540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 37835356 - 37835274
Alignment:
| Q |
21 |
aaaccaccatgcaagaaggaaacaatcaacaagagtttgataattctactactacaacaaattctagtcatttagacaaggtt |
103 |
Q |
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| T |
37835356 |
aaaccactatgcaagaaggaaataatcaacaagagtgtaatgaatttactgctacaactagttctagtcatttggacaaggtt |
37835274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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