View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_46 (Length: 329)
Name: NF16912_low_46
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 41232505 - 41232818
Alignment:
| Q |
1 |
gattgttggtgtgttatcattgtcataaatgcaaactgaaaaaataataattttgaagtgatgcatgcgatactaattcaagggtacattttaaaaagat |
100 |
Q |
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| T |
41232505 |
gattgttggtgtgttaccattgtcataaatgcaaactgaaaaaataataattttgaagtgatgcatgcgatactaattcaagggtacattttaaaaagat |
41232604 |
T |
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| Q |
101 |
taactaaaactacattgaaaatgaaagtaacaaatataacatgatttatgaattgaaatatatactttagggggagcttgtggctttggagaatatggaa |
200 |
Q |
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| T |
41232605 |
taactaaaactacattgaaaatgaaagtaacaaatataacatgatttatgaattgaaatatatactttagggggagcttgtggctttggagaatatggaa |
41232704 |
T |
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| Q |
201 |
ggacagtgaatgatggcaatgttgctggcgtgtctaagctatggaagaatggcactggctgcggtgcttgctatcaggtagttttcaaccataattgtaa |
300 |
Q |
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| T |
41232705 |
ggacagtgaatgatggcaatgttgctggtgtgtctaagctatggaagaatggcactggctgcggtgcatgctatcaggtagttttcaaccataattgtaa |
41232804 |
T |
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| Q |
301 |
caaaatatttattt |
314 |
Q |
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|||||||||||||| |
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| T |
41232805 |
caaaatatttattt |
41232818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 276
Target Start/End: Complemental strand, 4264303 - 4264193
Alignment:
| Q |
166 |
tttagggggagcttgtggctttggagaatatggaaggacagtgaatgatggcaatgttgctggcgtgtctaagctatggaagaatggcactggctgcggt |
265 |
Q |
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| T |
4264303 |
tttagagggagcttgtggctatggtgattacggacagacagtaaatgatggcaatgtcgcaggcgtgtcttggctatggaagaatggatctggttgtggt |
4264204 |
T |
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| Q |
266 |
gcttgctatca |
276 |
Q |
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| T |
4264203 |
gcatgctatca |
4264193 |
T |
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