View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_48 (Length: 313)
Name: NF16912_low_48
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 19641229 - 19640941
Alignment:
| Q |
18 |
aattagatattgatcgtnnnnnnntggcatcaaaggaagattttaccgacattgattgagctactctgcaagttggctttgttcttagcattgtcaagat |
117 |
Q |
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| T |
19641229 |
aattagatattgatcgtaaaaaaatggcatcaaaggaagattttaccgacattgtttaagctactctgcaagttggctttgttcttagcattgtcgagat |
19641130 |
T |
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| Q |
118 |
aacgtaatacgcctaacatggaattgaannnnnnnncacttgaaggggggaagtagtactgcaataaatataataataattgtgctcagtaatcttagtt |
217 |
Q |
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| T |
19641129 |
aacgtaatacgcctaccatggaattgaattttttttcacttgaaggagggaagtagtactgcaataaatataataataattgtgctcagtaatcttagtt |
19641030 |
T |
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| Q |
218 |
acagaatttctcaaaatatttagataaagtccgaacggttttacaaccatattcagcaacattttaactcagaaatgaagttcatctcact |
308 |
Q |
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| T |
19641029 |
acagaatttctcaaaatatttagataaagtccgaaccgttttacaacc--attcagcaacattttcactcagaaatgaagttcatttcact |
19640941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 19640044 - 19639910
Alignment:
| Q |
65 |
gacattgattgagctactctgcaagttggctttgttcttagcattgtcaagataacgtaatacgcctaacatggaattgaannnnnnnncacttgaaggg |
164 |
Q |
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||||||| ||||| ||||||||||| | |||||||||||||| |||||||||||||| | ||| |||| |||||||||||| ||||||||||| |
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| T |
19640044 |
gacattgtttgagatactctgcaagctagctttgttcttagccttgtcaagataacgaagtacccctaccatggaattgaacttttgatcacttgaaggg |
19639945 |
T |
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| Q |
165 |
gggaagtagtactgcaataaatataataataattg |
199 |
Q |
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| T |
19639944 |
gggaagtaaaactgcaataaatataataagaattg |
19639910 |
T |
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