View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_49 (Length: 310)
Name: NF16912_low_49
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 292
Target Start/End: Complemental strand, 41302337 - 41302046
Alignment:
| Q |
15 |
tagggggtaacccgtagaaaaatagggcaggaaaataaatttaatacttcccaaaaaagaaatattttaaattttgggagtaatcgg----------gtg |
104 |
Q |
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| T |
41302337 |
tagggggtaacccgtagaaaaatagggcaggaaaataaatttaatacttcccaaaaaagaaatattttaaattttgggagtaatcggaaaaccagttgtg |
41302238 |
T |
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| Q |
105 |
tttttcttatagtggaactttctttctttcaagaatctcatcatgattatataacccttagtaaatcatttgtgtgttggtattctattagtgtgcgatg |
204 |
Q |
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| T |
41302237 |
tttttcttatagtggaactttctttctttcaagagtctcatcatgattatataacccttagtaaatcatttgtgtgttggtattctattagtgtgcgatg |
41302138 |
T |
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| Q |
205 |
ggtcgagaatgagcatataagatttcatatnnnnnnnnnnnccagct-------taatacatatttttggaggccaattatatgatgcataaatg |
292 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41302137 |
ggtcgagaatgagcatataagatttcatat---aaaaaaacccagcttaaatagtaatacatatttttggaggccaattatatgatgcataaatg |
41302046 |
T |
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