View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16912_low_53 (Length: 300)

Name: NF16912_low_53
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16912_low_53
NF16912_low_53
[»] chr6 (15 HSPs)
chr6 (18-287)||(4561694-4561963)
chr6 (18-287)||(4575487-4575756)
chr6 (18-189)||(4481995-4482166)
chr6 (35-209)||(4489041-4489215)
chr6 (35-209)||(4503137-4503311)
chr6 (19-268)||(3173054-3173303)
chr6 (46-170)||(4471066-4471190)
chr6 (52-199)||(4623427-4623574)
chr6 (76-189)||(4462340-4462453)
chr6 (46-211)||(4627258-4627423)
chr6 (46-170)||(4259031-4259155)
chr6 (46-170)||(4265912-4266036)
chr6 (46-212)||(4298353-4298519)
chr6 (107-190)||(4255555-4255638)
chr6 (52-124)||(4581209-4581281)
[»] scaffold0477 (1 HSPs)
scaffold0477 (51-211)||(3382-3542)
[»] scaffold0288 (1 HSPs)
scaffold0288 (53-201)||(2316-2464)
[»] chr5 (1 HSPs)
chr5 (46-170)||(24104240-24104368)
[»] scaffold0475 (1 HSPs)
scaffold0475 (53-139)||(2001-2087)
[»] chr7 (1 HSPs)
chr7 (74-141)||(3087923-3087990)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 4561963 - 4561694
Alignment:
Q  18 aatcaatcataacgaactttcgccacttctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagt 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4561963 aatcaatcataacgaactttcaccacttctttgatgaacttcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagt 4561864  T
Q  118 gtctgattgttacatgccatttacagtagctgctgctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttcttggcttgt 217  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  4561863 ttctgattgctacatgccatttacagtagctgctgctgaagaacatgcactcccagttgttcttttttccccaagtagagcatgttatttcttggcttgt 4561764  T
Q  218 ttgctcagtcctaaaacgtatcagaatagtcaactaccatttaaaggtaatcatttgtgttccctttttc 287  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  4561763 ttgctcagtcctaaaatgtatcagaatagtcaactaccattcaaaggtaatcatttctgttccctttttc 4561694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 4575756 - 4575487
Alignment:
Q  18 aatcaatcataacgaactttcgccacttctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4575756 aatcaatcataacgaactttcgccacttctttgatgaacttcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagt 4575657  T
Q  118 gtctgattgttacatgccatttacagtagctgctgctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttcttggcttgt 217  Q
     |||||||| ||||||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||||| |||||||||||||||||||| |||||    
T  4575656 ttctgattgctacatgccatttacagtagatgctgctgaagaacatgccctcccaattgttcttttttccccatgtagtgcatgttatttcttgtcttgt 4575557  T
Q  218 ttgctcagtcctaaaacgtatcagaatagtcaactaccatttaaaggtaatcatttgtgttccctttttc 287  Q
    |||||||||||||||| ||||| |||||||||| ||||||| |||||||||||||| |||||||||||||    
T  4575556 ttgctcagtcctaaaatgtatctgaatagtcaagtaccattcaaaggtaatcatttttgttccctttttc 4575487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 4482166 - 4481995
Alignment:
Q  18 aatcaatcataacgaactttcgccacttctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagt 117  Q
    |||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||| || |||||||||||||||  ||||||||||||||||||||||||    
T  4482166 aatcaatcatgacgaactttcgccacttctttgatgaatttctggctaaacttcatgaatctgccactgctggtattatccccccagtcacttgcttagt 4482067  T
Q  118 gtctgattgttacatgccatttacagtagctgctgctgaagaacatgcactcctagttgttcttttttcccc 189  Q
     |||||||| ||||||||||||||||||| |||||| |||||||||||||||| | ||||||| ||||||||    
T  4482066 ttctgattgctacatgccatttacagtagatgctgccgaagaacatgcactcccaattgttctcttttcccc 4481995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 35 - 209
Target Start/End: Original strand, 4489041 - 4489215
Alignment:
Q  35 tttcgccacttctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgc 134  Q
    |||| ||| ||||||| || | |||||||||||| | | |||||||| |||||||||| |||||| ||||| ||||||||||| ||||||||  | |||     
T  4489041 tttcaccaattctttggtgtatttcttgctaaacttaatgactctgctactgctggtcttatccctccagttacttgcttagtttctgattgcaatatgg 4489140  T
Q  135 catttacagtagctgctgctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttct 209  Q
    |||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||| ||||||||| ||| ||||    
T  4489141 catttacagtagatgctgctgaagaacatgcactcccaattgttctcttttccccatgtagtgcatcttacttct 4489215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 209
Target Start/End: Original strand, 4503137 - 4503311
Alignment:
Q  35 tttcgccacttctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgc 134  Q
    |||| ||| ||||||| |||| |||||| ||||| | | ||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||  ||||||    
T  4503137 tttcaccaattctttggtgaatttcttgttaaacttaatgactctgccactgctggtcttatccctccagttacttgcttagtttctgattgcaacatgc 4503236  T
Q  135 catttacagtagctgctgctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttct 209  Q
    ||||| |||||  |||||||||||||||| |||||| | |||||||  |||||||| ||||||||| ||| ||||    
T  4503237 catttccagtatatgctgctgaagaacatacactcccaattgttctcgtttccccatgtagtgcatcttacttct 4503311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 3173303 - 3173054
Alignment:
Q  19 atcaatcataacgaactttcgccacttctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtg 118  Q
    ||||||||| | ||||||||  | ||| |||  ||||||| ||||||||| ||| || ||||| |||||||||| ||| || ||||| |||||||| ||     
T  3173303 atcaatcatcaagaactttcatcgcttttttcgtgaactttttgctaaacttcacgattctgcaactgctggtcttatacctccagttacttgctttgtt 3173204  T
Q  119 tctgattgttacatgccatttacagtagctgctgctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttcttggcttgtt 218  Q
    || ||||| || |||||||||||||||| || ||||||||||||||| |||| | ||||||| ||||| ||  ||||||||||||  ||||||||| |||    
T  3173203 tccgattgctatatgccatttacagtagatgttgctgaagaacatgctctcccaattgttctattttcgccgtgtagtgcatgtttcttcttggctggtt 3173104  T
Q  219 tgctcagtcctaaaacgtatcagaatagtcaactaccatttaaaggtaat 268  Q
    | |  | |||||||  || ||||||| ||| ||||||| | |||||||||    
T  3173103 ttcatattcctaaattgtttcagaatggtctactaccactcaaaggtaat 3173054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 4471190 - 4471066
Alignment:
Q  46 ctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagta 145  Q
    ||||| |||||||||| ||| || | | | ||||||||||||||||| |||||| ||||| |||||| || | |||||||||||||||||||||||||||    
T  4471190 ctttggtgaacttcttactagacttgatgcctctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagta 4471091  T
Q  146 gctgctgctgaagaacatgcactcc 170  Q
    | |||||||||||||| ||||||||    
T  4471090 gatgctgctgaagaacgtgcactcc 4471066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 199
Target Start/End: Complemental strand, 4623574 - 4623427
Alignment:
Q  52 tgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagtagctgct 151  Q
    |||||||||||| |||| ||| ||||||||||||||||||| | | || ||||| ||||||||||| || |||||||||||| |||||||| ||   |||    
T  4623574 tgaacttcttgcaaaacttcatgactctgccactgctggtcttgttccaccagttacttgcttagtttccgattgttacatgtcatttacaatacaagct 4623475  T
Q  152 gctgaagaacatgcactcctagttgttcttttttccccaagtagtgca 199  Q
    |||||||| |||||||||| | ||||| | || ||||||  |||||||    
T  4623474 gctgaagagcatgcactcccaattgttttcttctccccagctagtgca 4623427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 4462453 - 4462340
Alignment:
Q  76 ctctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagtagctgctgctgaagaacatgcactcctagtt 175  Q
    |||||||||||| | || |||||| || || |||||| |||| |||||||||||||||||||||||||| | ||| |||||| ||| |||||||| | |     
T  4462453 ctctgccactgccgatcttatccctccggttacttgcatagtttctgattgttacatgccatttacagtggatgccgctgaacaacgtgcactcccaatc 4462354  T
Q  176 gttcttttttcccc 189  Q
    ||||| ||||||||    
T  4462353 gttctcttttcccc 4462340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 211
Target Start/End: Complemental strand, 4627423 - 4627258
Alignment:
Q  46 ctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagta 145  Q
    ||||| ||||||||||||||||| ||| ||||| ||||||||||||| | |  | ||||| ||||||||||| || |||||||  ||| |||||||  ||    
T  4627423 ctttggtgaacttcttgctaaacttcatgactcagccactgctggtcttgttgcaccagttacttgcttagtttcagattgtttaatgtcatttaccata 4627324  T
Q  146 gctgctgctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttcttg 211  Q
       |||||||||||||||||||||| | ||| ||| |||||  |   ||||||||||| |||||||    
T  4627323 caagctgctgaagaacatgcactcccaattgctctcttttctacttctagtgcatgttctttcttg 4627258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 170
Target Start/End: Original strand, 4259031 - 4259155
Alignment:
Q  46 ctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagta 145  Q
    ||||| ||||||||||||||||| ||||||||| |||||| |||||  | | || || || ||||||||||| ||||||||||||||| ||||||   ||    
T  4259031 ctttggtgaacttcttgctaaacttcaagactcagccactactggtattgttccacctgttacttgcttagtttctgattgttacatgtcatttagtata 4259130  T
Q  146 gctgctgctgaagaacatgcactcc 170  Q
       ||||||||||| ||||||||||    
T  4259131 caagctgctgaagagcatgcactcc 4259155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 170
Target Start/End: Original strand, 4265912 - 4266036
Alignment:
Q  46 ctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagta 145  Q
    |||||||||||||||| ||| || |||  | ||||||| || ||||  ||| || ||| | |||||||| || || |||||||||||||| |||||| ||    
T  4265912 ctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaata 4266011  T
Q  146 gctgctgctgaagaacatgcactcc 170  Q
    | |||||| ||||||||||||||||    
T  4266012 gatgctgcggaagaacatgcactcc 4266036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 212
Target Start/End: Original strand, 4298353 - 4298519
Alignment:
Q  46 ctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagta 145  Q
    ||||| ||||||||||||||||| ||  || |||||||||||||||| | | || ||||| |||||||||||  |||||| ||  ||| |||||||  ||    
T  4298353 ctttggtgaacttcttgctaaacttcgtgattctgccactgctggtcttgtaccaccagttacttgcttagttgctgattttttaatgtcatttaccata 4298452  T
Q  146 gctgctgctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttcttgg 212  Q
       ||||| |||||||||||||||| | || |||| ||||  |||  |||||||||||  |||||||    
T  4298453 caagctgcggaagaacatgcactcccaattattctcttttgtccagctagtgcatgttccttcttgg 4298519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 4255555 - 4255638
Alignment:
Q  107 acttgcttagtgtctgattgttacatgccatttacagtagctgctgctgaagaacatgcactcctagttgttcttttttcccca 190  Q
    ||||||||||| ||||||||||||||| |||||||  ||   ||||||||||| |||||||||| | |||||||  ||||||||    
T  4255555 acttgcttagtttctgattgttacatgtcatttaccatacaagctgctgaagagcatgcactcccaattgttctcctttcccca 4255638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 4581281 - 4581209
Alignment:
Q  52 tgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgat 124  Q
    |||||||||||||| || | | |||||||||||| |||||| | |||| ||||| |||||| |||| ||||||    
T  4581281 tgaacttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgat 4581209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 211
Target Start/End: Original strand, 3382 - 3542
Alignment:
Q  51 atgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagtagctgc 150  Q
    |||||||||||| ||||| ||| ||||||||||||||||||| | | || | ||| |||||| ||||  ||||||||||||||||||||||  ||   ||    
T  3382 atgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccatacaagc 3481  T
Q  151 tgctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatgttatttcttg 211  Q
    |||||||||||||||||||| | ||||||| |||||| |  | |||||||||| |||||||    
T  3482 tgctgaagaacatgcactcccaattgttctcttttccaccggcagtgcatgttctttcttg 3542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 2316 - 2464
Alignment:
Q  53 gaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacagtagctgctg 152  Q
    ||||||||||||| || | | || ||||||| | |||||| |||||| ||||| ||| ||||||| ||||||||||||||| |||||||  ||   ||||    
T  2316 gaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcatttaccatacaagctg 2415  T
Q  153 ctgaagaacatgcactcctagttgttcttttttccccaagtagtgcatg 201  Q
    |||||||| ||||||||| | |  |||||| ||| ||| ||||||||||    
T  2416 ctgaagaatatgcactcccaatccttctttattcgccaggtagtgcatg 2464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 24104368 - 24104240
Alignment:
Q  46 ctttgatgaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttacag-- 143  Q
    |||||||||||||||| ||| || |||  | ||||||| || ||||  ||| || ||| | ||||||||||| || ||||||||||||||||||||||      
T  24104368 ctttgatgaacttcttactagacttcatcaatctgccaatgatggtgttattccaccaattacttgcttagtttcggattgttacatgccatttacagtt 24104269  T
Q  144 --tagctgctgctgaagaacatgcactcc 170  Q
      | | ||||| |||||||||||||||||    
T  24104268 gatcgatgctgttgaagaacatgcactcc 24104240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 2087 - 2001
Alignment:
Q  53 gaacttcttgctaaacgtcaagactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccattt 139  Q
    ||||||||||||| || | | || ||||||| | |||||| |||||| ||||| ||| ||||||| ||||||||||||||| |||||    
T  2087 gaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcattt 2001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 3087990 - 3087923
Alignment:
Q  74 gactctgccactgctggtcctatccccccagtcacttgcttagtgtctgattgttacatgccatttac 141  Q
    |||||||||  |||||||| ||| || ||||| |||||||||||  |||||| |||||||||||||||    
T  3087990 gactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttac 3087923  T

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