View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_6 (Length: 606)
Name: NF16912_low_6
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 17 - 593
Target Start/End: Original strand, 42270671 - 42271247
Alignment:
| Q |
17 |
agatatatcagtttcttctacatctttcaccaatgcatcaaaccattcaagcctcactgttgaatcctctcgaagagtattcgtcgagccgcatgcacca |
116 |
Q |
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| T |
42270671 |
agatatatcagtttcttctacatctttcaccaatgcatcaaaccattcaagcctcactgttgaatcctctcgaagagtattcgtcgagccgcatgcacca |
42270770 |
T |
|
| Q |
117 |
ccttcctccaacgacttcatggccgaacatgcttcggataaccaactatggagtcatgttttatcgtaagtttcgtatattgttaattattacaattgtg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42270771 |
ccttcctccaacgacttcatggccgaacatgcttcggataaccaactatggagtcatgttttatcgtaagtttcgtaaattgttaattattacaattgtg |
42270870 |
T |
|
| Q |
217 |
ctatatgttatgatgaaaactagtctcaatatcacgaaataatgtgcgttagaatttcagaacacaggnnnnnnnnttcatatgctattggctgaaaaca |
316 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||| |
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| T |
42270871 |
ctatatgttataatgaaaactagtctcaatatcacgaaataatgtgcgttagaatttcagtacaaaggaaaaaaaattcatatgctattgactgaaaaca |
42270970 |
T |
|
| Q |
317 |
tggatctgtccaatgatattattttgtgacacttcttaatggaaccccttcatgacagtaaacaatttcctaattattaataaatatctgatgtttttat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42270971 |
tggatctgtccaatgatattattttgtgacacttcttaatggaaccccttcatgacagtaaacaatttcctaattattaataaatatctgatgtttttac |
42271070 |
T |
|
| Q |
417 |
tactatatattattgaaactggcaagaaattttattgctatataagagacaaatcttttacagttttaggttagaaattttgtgaagtttaagggtgttt |
516 |
Q |
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| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42271071 |
tgctatatattattgaaactggcaaaaaattttattgctatataagagacaaatcttttacagttttaggttagaaattttgtgaagtttaagggtgttt |
42271170 |
T |
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| Q |
517 |
taagttaggtatatagggttaaagtatactatggnnnnnnncagtgtgagtaaataatattcttctaggcctttgct |
593 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
42271171 |
taagttaggtatatagggttaaagtatacgatggtttttttcagtgtgagtaaataatattcttctaggcctttgct |
42271247 |
T |
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