View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_62 (Length: 256)
Name: NF16912_low_62
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 36770140 - 36769912
Alignment:
| Q |
19 |
gttctcccatcaaaactagaaatctaagacaagattaaccaaacttgagggagaagatgatgatttcaaaaaacttcaccttagcctctttggttttctg |
118 |
Q |
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| T |
36770140 |
gttctcccatcaaaactagaaatctaagacaagactaaccaaacttgagggagaagatgatgatttcaaaaaacttcaccttagcctctttggttttctg |
36770041 |
T |
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| Q |
119 |
tctctctctagttcaagccgagcatgaggttgtagtgtgtatctttctttatcttccagagagacattgtagaatagaagtggcatatgttagctgatat |
218 |
Q |
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| T |
36770040 |
tctctctctagttcaagccgagcatgaggttgtagtgtgtatctttctttatcttccagagagacattgtagtataaaagtggaatatgttagctgatat |
36769941 |
T |
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| Q |
219 |
ttttccctttttaccctcagaagtataat |
247 |
Q |
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| T |
36769940 |
ttttccctttttaccctcagaagtataat |
36769912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 36746605 - 36746538
Alignment:
| Q |
121 |
tctctctagttcaagccgagcatgaggttgtagtgtgtatctttctttatcttccagagagacattgt |
188 |
Q |
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| T |
36746605 |
tctctctagttcaagcggagcatgaggctgttgtgtgtctctttctttgttttgcagagagacattgt |
36746538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 36765390 - 36765323
Alignment:
| Q |
121 |
tctctctagttcaagccgagcatgaggttgtagtgtgtatctttctttatcttccagagagacattgt |
188 |
Q |
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| T |
36765390 |
tctctctaattcaagctgagcatgaggctgttgtgtgtctctttctttgttttgcagagagacattgt |
36765323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 36754337 - 36754277
Alignment:
| Q |
19 |
gttctcccatcaaaactagaaatctaagacaagattaaccaaacttgagggagaagatgat |
79 |
Q |
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|||||| |||||||| || ||||||||||||||| | ||||||||||| ||||||||||| |
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| T |
36754337 |
gttctcacatcaaaagtaaaaatctaagacaagactcaccaaacttgatagagaagatgat |
36754277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 36746676 - 36746613
Alignment:
| Q |
19 |
gttctcccatcaaaactagaaatctaagacaagattaaccaaacttgagggagaagatgatgat |
82 |
Q |
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|||||| |||||||| |||||||||||||||||| | ||||||||| | | ||| ||||||||| |
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| T |
36746676 |
gttctcacatcaaaagtagaaatctaagacaagactcaccaaacttaaagaagatgatgatgat |
36746613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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