View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16912_low_64 (Length: 252)
Name: NF16912_low_64
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_64 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 35834043 - 35834276
Alignment:
| Q |
3 |
ccacaaacggtgtagcctaataaccaactggatactgcattgatagaaaagtcagttttatggcaagctaccggcagtacgagaagatatttatttcgca |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35834043 |
ccacaaacggtgtagcctaataaccaactggatactgcattgatagaaaagtcagttttatggccagctaccggcagtacgagaagatatttatttcgca |
35834142 |
T |
|
| Q |
103 |
ttttggcgtattattaggagatgatttgagttttccaatctagaaaaacccacaaatattcatgtactaccacctcaaatcagaaactactagtctaaaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35834143 |
ttttggcgtattattaggagatgatttgagttttccaatctagaaaaacccacaaatattcatgtactaccacctgaaatcagaaactactagtctaaaa |
35834242 |
T |
|
| Q |
203 |
atgctaataaaaagtgtaagttcatgtttaaata |
236 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |
|
|
| T |
35834243 |
atggtaataaaaagtgtaagttcatgtttaaata |
35834276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University