View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_68 (Length: 246)
Name: NF16912_low_68
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 50548208 - 50548427
Alignment:
| Q |
16 |
tcaatctaatcctaagtttatacacttccactccacaaaatttttcattaattgtatgtccggcaggatcttctttaattgcaaatagatgtatcggaaa |
115 |
Q |
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| T |
50548208 |
tcaatctaatcctaagtttatacacttccactccacaaaatttttcattaattgtatgtccggcaggatcttctttaattgcaaatagatgtatcggaaa |
50548307 |
T |
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| Q |
116 |
atagctttataatgtacatgcaaaaagtaagagttctgaaatgaaagttatgttggcataatgcattcctctcttcctatatacttaaactagtctgtga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50548308 |
atagctttataatgtacatgcaaaaagtaagagttctgaaatgaaagttatgttggcataatgcattcctctcttcctatataattaaactagtctgtga |
50548407 |
T |
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| Q |
216 |
accttatgctttggagtatt |
235 |
Q |
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|||||||||||| ||||||| |
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| T |
50548408 |
accttatgctttcgagtatt |
50548427 |
T |
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