View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_70 (Length: 243)
Name: NF16912_low_70
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 36 - 227
Target Start/End: Complemental strand, 38596275 - 38596084
Alignment:
| Q |
36 |
tcggttacttgttattgttaattaacataaattttatagatagcaccccagtttattttatcatttagaatactgctttaaaaatttacttatggtgtgc |
135 |
Q |
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| T |
38596275 |
tcggttacttgttattgttaattaacataaattttatagatagcaccccaatttattttatcatttagaatactgctttaaaaatttacttatggtgtgc |
38596176 |
T |
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| Q |
136 |
atccaacaagattacgttggatcaagtgaaacatagttaagtgcaatattagttcttttcttcttttttatttgatctattttggtccacta |
227 |
Q |
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| T |
38596175 |
agccaacaagattacgttggatcaagtgaaacatagttaagtgcaatattagttcttttcttcttttttatttgatctattttggtccacta |
38596084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 38060826 - 38060683
Alignment:
| Q |
39 |
gttacttgttattgttaattaacataaattttatagatagcaccccagtttattttat--catttagaatactgctttaaaaatttacttatggtgtgca |
136 |
Q |
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| T |
38060826 |
gttacttgttattgttaattaacataaatttta--gatagcaccccactttattatatatcattcagagtactgctttacaaatttacttatggtgtgca |
38060729 |
T |
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| Q |
137 |
----tccaacaagattacgttggatcaagtgaaacatagttaagtg |
178 |
Q |
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| T |
38060728 |
gagatccaactagattacgttggatcaagtgaaacatagctaagtg |
38060683 |
T |
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