View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16912_low_72 (Length: 238)

Name: NF16912_low_72

Description: NF16912

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16912_low_72

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 193; E-Value: 1e-105

Query Start/End: Original strand, 18 - 238

Target Start/End: Original strand, 48706405 - 48706625

Alignment:

Q	18	tgatttagattatcacaattggtggtttaatcctcttaaatgtcttgtttatatttcttaggatgcagttttagtttgtgttttgttatggttgtctatt	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48706405	tgatttagattatcacaattggtggtttaatcctcttaagtgtcttgtttatgtttcttacgatgcagttttagtttgtgttttgttatggttgtctatt	48706504	T

Q	118	gtttgttaagaaccatttgtgctggaagggcttgtttgatgtgattatatttatatacaattcattttggtgttttcaaaataaatgtcgagattattac	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	48706505	gtttgttaagaactatttgtgttggaagggcttgtttgatgtgattatatttatatacaattcattttggtgttttcaaaataaatgtcgatattattac	48706604	T

Q	218	attaaacacttttacgaactt	238	Q
		\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48706605	attgaacacttttacgaactt	48706625	T

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Target: chr4; HSP #2

Raw Score: 40; E-Value: 0.00000000000009

Query Start/End: Original strand, 29 - 104

Target Start/End: Original strand, 12653613 - 12653688

Alignment:

Q	29	atcacaattggtggtttaatcctcttaaatgtcttgtttatatttcttaggatgcagttttagtttgtgttttgtt	104	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	12653613	atcacaatcggtggcttaatcctcttaagtgccttgtttatgtttcttaagctgcatttttagtttgtattttgtt	12653688	T

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