View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_80 (Length: 228)
Name: NF16912_low_80
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_80 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 35833829 - 35834062
Alignment:
| Q |
1 |
atcatcatttattctaagatctcatttaagttctaaataatgattttttacaccaccttgtcagtaagaaaagctaacaaagatttataaattccaaact |
100 |
Q |
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| T |
35833829 |
atcatcatttattctaagatctcatttaagttctaaataatgattttttacaccaccttgtcagtaagaaaagctaataaagatttataaattccaaact |
35833928 |
T |
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| Q |
101 |
aaactagaatatgtatcaaacatgtcttgtattttctatcacctggttagaaaggaccctgatactaacatcaaaac------nnnnnnntataagaatc |
194 |
Q |
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| T |
35833929 |
aaactagaatatgtatcaaacatgtcttgtattttctatcacctggttagaaaggaccctgatactaacatcaaaacaaaaaaaaaaatatataagaatc |
35834028 |
T |
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| Q |
195 |
ttatgccataattgccacaaacggtgtagcctaa |
228 |
Q |
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| T |
35834029 |
ttatgccataattaccacaaacggtgtagcctaa |
35834062 |
T |
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