View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_82 (Length: 227)
Name: NF16912_low_82
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_82 |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 34491693 - 34491797
Alignment:
| Q |
26 |
aaggatttggatccaatttcactctgatcatgtttgagaatttccaaa-tatgtacttacgttgtaatcatggaatggttatatattttaacgtttgcaa |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
34491693 |
aaggatttggatccaatttcactctgatcatgtttgagaatttccaaaatatgtacttaagttgtaatcatggaatagttatatattttaacgtttgcaa |
34491792 |
T |
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| Q |
125 |
cctta |
129 |
Q |
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||||| |
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| T |
34491793 |
cctta |
34491797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 34523861 - 34523932
Alignment:
| Q |
142 |
ttaatgttttcaaaaggtcgtttaagaaactcttttaaagagtagtttctcttcttcaccaaaggacatgag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34523861 |
ttaatgttttcaaaaggtcgtttaagaaactcttttaaagagtagtttctcttcttcaccaaaggacatgag |
34523932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 34514850 - 34514908
Alignment:
| Q |
26 |
aaggatttggatccaatttcactctgatcatgtttgagaatttcc-aaatatgtactta |
83 |
Q |
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|||||||| ||||||||||||||| |||| ||||||||||||||| ||||||||||||| |
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| T |
34514850 |
aaggatttagatccaatttcactcagatcctgtttgagaatttccaaaatatgtactta |
34514908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 27631530 - 27631588
Alignment:
| Q |
26 |
aaggatttggatccaatttcactctgatcatgtttgagaatttcc-aaatatgtactta |
83 |
Q |
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|||||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||| |
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| T |
27631530 |
aaggatttaaatccaatttcactcagatcctgtttgagaatttccaaaatatgtactta |
27631588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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