View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_84 (Length: 222)
Name: NF16912_low_84
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_84 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 55907574 - 55907387
Alignment:
| Q |
17 |
agatcaaggtaggtaatgtaggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaagagtgttggtga |
116 |
Q |
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| T |
55907574 |
agatcaaggtaggtaatgtaggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaagagtgttggtga |
55907475 |
T |
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| Q |
117 |
ctgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcgttgatcagaaatgtgaagacatattcccaaca |
204 |
Q |
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| T |
55907474 |
ctgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcgttgatcagaaatgtgaagacatattcccaaca |
55907387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 1036316 - 1036129
Alignment:
| Q |
17 |
agatcaaggtaggtaatgtaggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaagagtgttggtga |
116 |
Q |
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| T |
1036316 |
agatcaaggtaggtaatgttggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggatagttagagagaatcgaagagtgttggtga |
1036217 |
T |
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| Q |
117 |
ctgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcgttgatcagaaatgtgaagacatattcccaaca |
204 |
Q |
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| T |
1036216 |
ctgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcattgatcagaaatgtgaagacatattccgaaca |
1036129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 1036510 - 1036422
Alignment:
| Q |
17 |
agatcaaggtaggtaatgtaggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaag |
105 |
Q |
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| T |
1036510 |
agatcaaggtaggtaatgttggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggatagttagagagaatcgaag |
1036422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 44575224 - 44575173
Alignment:
| Q |
110 |
ttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagc |
161 |
Q |
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| T |
44575224 |
ttggtgattgagagaaactgttttgagacgatggagagagacttcaagtagc |
44575173 |
T |
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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 41900315 - 41900247
Alignment:
| Q |
92 |
agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaagtag |
160 |
Q |
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| T |
41900315 |
agagagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtag |
41900247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 6403848 - 6403901
Alignment:
| Q |
109 |
gttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcg |
162 |
Q |
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| T |
6403848 |
gttggtgatagagaggaactgtttggatacggctgagagagatttcaagtagcg |
6403901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 513493 - 513428
Alignment:
| Q |
92 |
agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag |
157 |
Q |
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| T |
513493 |
agagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaag |
513428 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 10168865 - 10168825
Alignment:
| Q |
98 |
aatcgaagagtgttggtgactgagagaaactgtttggagac |
138 |
Q |
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| T |
10168865 |
aatcgaagagtgttggtgatggagaggaactgtttggagac |
10168825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 10176390 - 10176350
Alignment:
| Q |
98 |
aatcgaagagtgttggtgactgagagaaactgtttggagac |
138 |
Q |
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| T |
10176390 |
aatcgaagagtgttggtgatggagaggaactgtttggagac |
10176350 |
T |
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