View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16912_low_88 (Length: 212)

Name: NF16912_low_88
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16912_low_88
NF16912_low_88
[»] chr3 (2 HSPs)
chr3 (1-176)||(46187784-46187959)
chr3 (25-128)||(45529392-45529495)
[»] chr5 (3 HSPs)
chr5 (24-176)||(6381463-6381616)
chr5 (23-94)||(3135921-3135992)
chr5 (25-94)||(38064142-38064211)
[»] chr1 (1 HSPs)
chr1 (73-176)||(29148834-29148939)
[»] chr4 (3 HSPs)
chr4 (24-126)||(50056906-50057008)
chr4 (36-85)||(37114584-37114633)
chr4 (55-128)||(45330595-45330668)
[»] chr7 (1 HSPs)
chr7 (55-128)||(27600040-27600113)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 46187959 - 46187784
Alignment:
Q  1 ctagttttaaagactgattatgtaggtggcatttcacatgcgaaaggataaaactttctcaccttggaaaagtcaattttaaccactagattaagcaaag 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||    
T  46187959 ctagttttaaagactgattatgtaggtggcatttcacatgggaaaggataaaactttctcaccatgggagagtcaattttaaccactagattaagcaaag 46187860  T
Q  101 aacgctgtcttatcatagactctcaacattgaannnnnnnccacaccacctgccattctccctcttccatgtctct 176  Q
    |||  ||||||||||||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||    
T  46187859 aacattgtcttatcatagactctcaacattgaatttttttccacaccacttgccattctccctcttccatgtctct 46187784  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 45529495 - 45529392
Alignment:
Q  25 ggtggcatttcacatgcgaaaggataaaactttctcaccttggaaaagtcaattttaaccactagattaagcaaagaacgctgtcttatcatagactctc 124  Q
    |||||||||| ||||  ||||| |||||| |||| | |  ||| ||||| |||||||||||||| || ||| |||||||  | | |||||||||||||||    
T  45529495 ggtggcatttaacataggaaagcataaaagtttcccgctatgggaaagttaattttaaccactaaatcaagtaaagaacattatgttatcatagactctc 45529396  T
Q  125 aaca 128  Q
    ||||    
T  45529395 aaca 45529392  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 6381616 - 6381463
Alignment:
Q  24 aggtggcatttcacatgcgaaaggataaaactttctcaccttggaaaagtcaattttaaccactagattaagcaaagaacgctgtcttatcatagactct 123  Q
    ||||||||||||||||| ||||||||||||||||  |||| | | |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  6381616 aggtggcatttcacatgggaaaggataaaacttttccaccataggaaagtcaattttaaccactagattaagcaaagaacattgtcttatcatagactct 6381517  T
Q  124 caacatt-gaannnnnnnccacaccacctgccattctccctcttccatgtctct 176  Q
    ||| ||| ||         ||||||||||||||||||| ||| |||||||||||    
T  6381516 caatattagatttttttttcacaccacctgccattctctctcctccatgtctct 6381463  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 3135921 - 3135992
Alignment:
Q  23 taggtggcatttcacatgcgaaaggataaaactttctcaccttggaaaagtcaattttaaccactagattaa 94  Q
    |||||||||||||||||| ||| | ||||||| ||| |||| ||| |||||  |||||| ||||||||||||    
T  3135921 taggtggcatttcacatgggaaggtataaaaccttcccaccatgggaaagtttattttagccactagattaa 3135992  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 38064142 - 38064211
Alignment:
Q  25 ggtggcatttcacatgcgaaaggataaaactttctcaccttggaaaagtcaattttaaccactagattaa 94  Q
    |||||||||||||||| ||| ||  ||||||||| |||| ||| ||||| | ||||||||| ||||||||    
T  38064142 ggtggcatttcacatgggaagggtgaaaactttcccaccatgggaaagttacttttaaccattagattaa 38064211  T

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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 29148939 - 29148834
Alignment:
Q  73 tcaattttaaccactagattaagcaaagaacgctgtcttatcatagactctcaacattgaa--nnnnnnnccacaccacctgccattctccctcttccat 170  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||         |||||||||||||||||||| ||| |||||    
T  29148939 tcaattttaaccactagattaagcaaagaacattgtcttatcatagactctcaacattgaatttttttttccacaccacctgccattctctctcctccat 29148840  T
Q  171 gtctct 176  Q
    ||||||    
T  29148839 gtctct 29148834  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 50057008 - 50056906
Alignment:
Q  24 aggtggcatttcacatgcgaaaggataaaactttctcaccttggaaaagtcaattttaaccactagattaagcaaagaacgctgtcttatcatagactct 123  Q
    ||||| ||||| ||||| |||| ||||| | |||| || | ||  ||||| ||||| ||||||||||| ||| |||||||||||||||| | ||||||||    
T  50057008 aggtgacatttaacatgggaaatgataatattttcccatcatgagaaagttaatttgaaccactagatcaagtaaagaacgctgtcttaccgtagactct 50056909  T
Q  124 caa 126  Q
    |||    
T  50056908 caa 50056906  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 37114633 - 37114584
Alignment:
Q  36 acatgcgaaaggataaaactttctcaccttggaaaagtcaattttaacca 85  Q
    ||||| ||||||||||||||||| |||| |  ||||||||||||||||||    
T  37114633 acatgggaaaggataaaactttcccaccataaaaaagtcaattttaacca 37114584  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 45330595 - 45330668
Alignment:
Q  55 tttctcaccttggaaaagtcaattttaaccactagattaagcaaagaacgctgtcttatcatagactctcaaca 128  Q
    |||| |||| ||||||||| || ||| |||||||||||||| || |||  |  |||||||||||||||||||||    
T  45330595 tttcccaccatggaaaagttaaatttgaccactagattaagtaatgaatacattcttatcatagactctcaaca 45330668  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 27600113 - 27600040
Alignment:
Q  55 tttctcaccttggaaaagtcaattttaaccactagattaagcaaagaacgctgtcttatcatagactctcaaca 128  Q
    |||| |||| ||| ||||| || ||| |||||||||||||| || |||| |  |||||||||||||||||||||    
T  27600113 tttcccaccatgggaaagttaaatttgaccactagattaagtaatgaacacattcttatcatagactctcaaca 27600040  T

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