View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16913_high_12 (Length: 237)
Name: NF16913_high_12
Description: NF16913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16913_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 42062980 - 42062752
Alignment:
| Q |
1 |
atagttgacactggagagggatctttgcagcaataagaggataaagtgaagaaagagtgcaatgcgaagttcttttggttcaaagtctaaaatttccctt |
100 |
Q |
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| T |
42062980 |
atagttgacactggagagggatctttgtagcaataagaggataaagtgaagaaagagtgcaaggcaaagttcttttggttcaaagtctaaaatttccctt |
42062881 |
T |
|
| Q |
101 |
gataggtttcccattaatgtgaagtaactcaccctccccctcatccttcgtattcatttcagttgggatgcttccagcggaaggctgagttacgttcatt |
200 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42062880 |
gataggtttcccattattgtgaagcaactcaccctccccctcatctttcgtattcatttcagttgggatgcttccagcggaaggctgagttacgttcatt |
42062781 |
T |
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| Q |
201 |
acttagctgatcagattggtatgatgatg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42062780 |
acttagctgatcagattggtatgatgatg |
42062752 |
T |
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