View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16913_high_6 (Length: 277)

Name: NF16913_high_6
Description: NF16913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16913_high_6
NF16913_high_6
[»] chr2 (2 HSPs)
chr2 (142-260)||(20040189-20040307)
chr2 (37-146)||(20045306-20045418)
[»] chr5 (1 HSPs)
chr5 (136-259)||(39087425-39087548)
[»] chr8 (2 HSPs)
chr8 (173-256)||(2320142-2320225)
chr8 (191-258)||(38544251-38544318)
[»] chr6 (1 HSPs)
chr6 (173-256)||(18246215-18246298)
[»] chr4 (1 HSPs)
chr4 (173-256)||(16990526-16990609)
[»] chr3 (4 HSPs)
chr3 (173-256)||(37241991-37242074)
chr3 (173-256)||(1258703-1258786)
chr3 (173-227)||(13809965-13810019)
chr3 (198-256)||(34873626-34873684)
[»] chr7 (1 HSPs)
chr7 (173-256)||(31234154-31234237)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 142 - 260
Target Start/End: Complemental strand, 20040307 - 20040189
Alignment:
Q  142 tttaaaatggaaaaggtgaatcatttttcatcatgggtcacataggataaatggttagattgtgcacttctattaaatcttatcatgttctcccacacct 241  Q
    ||||| |||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20040307 tttaacatgggaaaggtgaatcattttccatcatggatcacataggataaatggttagattgtgcacttctattaaatcttatcatgttctcccacacct 20040208  T
Q  242 aatcttaatggcttctctc 260  Q
    |||||||||||||||||||    
T  20040207 aatcttaatggcttctctc 20040189  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 20045418 - 20045306
Alignment:
Q  37 tgatatcatgaacatatatttaacttctcaaaagaggcttaatacatagaattcatacattttcatacaa---caacaatcaagcagtattccattaatt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| || |||||||||||||    
T  20045418 tgatatcatgaacatatatttaacttctcaaaagaggcttaatacatagaattcatacattttcatacaacatcaacaatcaaacaatattccattaatt 20045319  T
Q  134 gagtggagtttaa 146  Q
    |||||||||||||    
T  20045318 gagtggagtttaa 20045306  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 259
Target Start/End: Complemental strand, 39087548 - 39087425
Alignment:
Q  136 gtggagtttaaaatggaaaaggtgaatcatttttcatcatgggtcacataggataaatggttagattgtgcacttctattaaatcttatcatgttctccc 235  Q
    ||||||||||| || | ||||||||||| |||  || ||| | |||||||  ||||||||||||||| |||| |||||| ||| ||||||||||||||||    
T  39087548 gtggagtttaacataggaaaggtgaatcctttcccaccatagatcacataaaataaatggttagattttgcatttctataaaaccttatcatgttctccc 39087449  T
Q  236 acacctaatcttaatggcttctct 259  Q
    ||||||||||||||| ||||||||    
T  39087448 acacctaatcttaattgcttctct 39087425  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 2320225 - 2320142
Alignment:
Q  173 catgggtcacataggataaatggttagattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggcttc 256  Q
    ||||||||||| | ||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||| ||| |||||    
T  2320225 catgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttc 2320142  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 38544318 - 38544251
Alignment:
Q  191 aatggttagattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggcttctc 258  Q
    |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||  |||||| |||||    
T  38544318 aatggttagattgtacacttctattaaatcttatcatgctctctcacacctaattctaatggtttctc 38544251  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 18246215 - 18246298
Alignment:
Q  173 catgggtcacataggataaatggttagattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggcttc 256  Q
    ||||||||||| | ||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||| ||| |||||    
T  18246215 catgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttc 18246298  T

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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 16990609 - 16990526
Alignment:
Q  173 catgggtcacataggataaatggttagattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggcttc 256  Q
    ||||||||||| | ||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||| ||| |||||    
T  16990609 catgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttc 16990526  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 37241991 - 37242074
Alignment:
Q  173 catgggtcacataggataaatggttagattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggcttc 256  Q
    ||||||||||| | ||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||| ||| |||||    
T  37241991 catgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttc 37242074  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 1258703 - 1258786
Alignment:
Q  173 catgggtcacataggataaatggttagattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggcttc 256  Q
    ||||| ||||| | |||||||||||||||| |||| |||||||||| ||||||||||||||||||| || |||| ||| |||||    
T  1258703 catggatcacacaagataaatggttagattatgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttc 1258786  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 13809965 - 13810019
Alignment:
Q  173 catgggtcacataggataaatggttagattgtgcacttctattaaatcttatcat 227  Q
    ||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||    
T  13809965 catgggtcacacaagataaatggttacattgtgcacttctattaaagcttatcat 13810019  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 34873684 - 34873626
Alignment:
Q  198 agattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggcttc 256  Q
    |||| ||||| |||||||||| ||||||||||||||||||| || |||| ||| |||||    
T  34873684 agatagtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttc 34873626  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 31234154 - 31234237
Alignment:
Q  173 catgggtcacataggataaatggttagattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggcttc 256  Q
    ||||| ||||| | |||||||| ||||||||| || |||||||||| ||||||||||||||| ||| || |||| ||| |||||    
T  31234154 catggatcacacaagataaatgattagattgtacatttctattaaagcttatcatgttctcctacatctgatctcaatagcttc 31234237  T

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