View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16913_low_1 (Length: 802)

Name: NF16913_low_1
Description: NF16913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16913_low_1
NF16913_low_1
[»] chr2 (12 HSPs)
chr2 (81-374)||(9181956-9182246)
chr2 (81-374)||(30654159-30654452)
chr2 (81-374)||(17971903-17972201)
chr2 (81-374)||(30649460-30649770)
chr2 (81-376)||(30616213-30616506)
chr2 (184-361)||(40036031-40036209)
chr2 (142-318)||(28450564-28450739)
chr2 (270-374)||(25480102-25480207)
chr2 (270-374)||(25487708-25487813)
chr2 (205-311)||(27417479-27417585)
chr2 (208-248)||(25480210-25480250)
chr2 (208-248)||(25487816-25487856)
[»] chr3 (8 HSPs)
chr3 (80-374)||(8886496-8886790)
chr3 (82-374)||(23662651-23662943)
chr3 (81-319)||(18470485-18470739)
chr3 (81-308)||(3686657-3686900)
chr3 (81-320)||(12967113-12967367)
chr3 (81-374)||(24755737-24756011)
chr3 (81-374)||(24764734-24765008)
chr3 (140-371)||(48434689-48434921)
[»] chr5 (13 HSPs)
chr5 (81-374)||(560037-560330)
chr5 (81-374)||(9911892-9912178)
chr5 (81-374)||(26670549-26670859)
chr5 (81-374)||(26942146-26942456)
chr5 (140-375)||(39521774-39522009)
chr5 (81-374)||(36938730-36939040)
chr5 (80-380)||(41999975-42000290)
chr5 (81-319)||(36426912-36427166)
chr5 (184-316)||(13585035-13585167)
chr5 (81-131)||(39521698-39521748)
chr5 (281-374)||(23978696-23978790)
chr5 (184-319)||(17507719-17507854)
chr5 (184-319)||(24773672-24773807)
[»] scaffold0045 (1 HSPs)
scaffold0045 (123-374)||(81653-81896)
[»] chr8 (13 HSPs)
chr8 (81-374)||(8319869-8320156)
chr8 (81-374)||(4239558-4239856)
chr8 (81-374)||(25368973-25369262)
chr8 (81-374)||(40127111-40127421)
chr8 (81-373)||(23083114-23083411)
chr8 (187-319)||(38183897-38184029)
chr8 (184-306)||(17023623-17023744)
chr8 (184-306)||(17554116-17554237)
chr8 (187-317)||(34117025-34117155)
chr8 (135-252)||(4539858-4539975)
chr8 (180-371)||(19952762-19952954)
chr8 (81-136)||(17023505-17023560)
chr8 (81-136)||(17553998-17554053)
[»] chr1 (6 HSPs)
chr1 (81-374)||(25853676-25853971)
chr1 (82-374)||(10138571-10138884)
chr1 (228-378)||(16749979-16750129)
chr1 (211-322)||(47453452-47453563)
chr1 (184-319)||(18809820-18809953)
chr1 (184-319)||(5727762-5727897)
[»] chr4 (11 HSPs)
chr4 (82-374)||(31272042-31272336)
chr4 (82-370)||(37261101-37261389)
chr4 (75-374)||(19105280-19105593)
chr4 (187-319)||(32222458-32222590)
chr4 (187-319)||(33465615-33465747)
chr4 (203-319)||(39319071-39319187)
chr4 (212-351)||(41815422-41815556)
chr4 (125-311)||(16951137-16951322)
chr4 (81-145)||(33465816-33465880)
chr4 (81-137)||(39318923-39318980)
chr4 (187-241)||(15134740-15134794)
[»] scaffold0468 (1 HSPs)
scaffold0468 (82-374)||(422-712)
[»] scaffold0060 (1 HSPs)
scaffold0060 (81-374)||(49261-49554)
[»] scaffold0070 (2 HSPs)
scaffold0070 (81-374)||(61861-62150)
scaffold0070 (81-114)||(66063-66096)
[»] chr7 (7 HSPs)
chr7 (187-375)||(21667959-21668148)
chr7 (216-319)||(24147789-24147892)
chr7 (212-319)||(10389632-10389739)
chr7 (199-314)||(15984856-15984971)
chr7 (147-317)||(1289622-1289789)
chr7 (81-129)||(21667830-21667878)
chr7 (80-145)||(10389827-10389892)
[»] chr6 (2 HSPs)
chr6 (81-319)||(15997909-15998146)
chr6 (81-124)||(16836324-16836367)
[»] scaffold0067 (1 HSPs)
scaffold0067 (210-293)||(31016-31099)
[»] scaffold0204 (1 HSPs)
scaffold0204 (522-576)||(16539-16592)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 81 - 374
Target Start/End: Complemental strand, 9182246 - 9181956
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 180  Q
    |||||||||||||||||||||||||||||||||| |  || ||| |||||||||| || ||||||||||||||||||| |||||||||||||| ||||||    
T  9182246 gtgatcagatatagtgcccccactagttcttaatatacaagagg-aatttagttttcccccactagtgcccccactat-tctttaatttacgggggtact 9182149  T
Q  181 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 280  Q
    || || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| | |||||||||    
T  9182148 tactt-catagaaatcaacatcttttaattctatgatcactttaacatttaggtcataaaacctacatgcttcattatttataacatacctaatgaatac 9182050  T
Q  281 acattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    ||||||||||||| || | ||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  9182049 acattcataggctctattggtgagtttatctctcttgggttcgaaattcgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 9181956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 81 - 374
Target Start/End: Original strand, 30654159 - 30654452
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 180  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||| |||   | ||||      
T  30654159 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactagtgcccccactat-tctttagtttcaaggggtaaa 30654257  T
Q  181 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 280  Q
    || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| || | |||||||| |||| ||||||||||     
T  30654258 tatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgctatttatagcatacccaatgaatat 30654357  T
Q  281 acattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||| ||||||||||||||||||||||||||||||||||||    
T  30654358 acattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatatttcagacaatcccaagttcaaaaaataagacaagttg 30654452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 81 - 374
Target Start/End: Complemental strand, 17972201 - 17971903
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----gtgcccccactatatctttaatttacggag 175  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||     ||||||||||||| |||||| |||   | |    
T  17972201 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgcccccactat-tctttagtttcaaggg 17972103  T
Q  176 gtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatg 275  Q
    |||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| || | |||||||| |||| ||||||    
T  17972102 gtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgctatttatagcatacccaatg 17972003  T
Q  276 aatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    |||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||||||||||    
T  17972002 aatatacattcataggctctactagtgagttcaactctcttgggatccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttg 17971903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 81 - 374
Target Start/End: Original strand, 30649460 - 30649770
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----------------gtgcccccactatatctt 163  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||                 ||||||||||||| ||||    
T  30649460 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgctcccactagtgcccccactat-tctt 30649558  T
Q  164 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttata 263  Q
    || ||||  | ||||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||    
T  30649559 tagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttata 30649658  T
Q  264 acatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaa 362  Q
     |||| |||||||||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||    
T  30649659 gcatacccaatgaatatacattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaa 30649758  T
Q  363 taagacaagttg 374  Q
    ||||||||||||    
T  30649759 taagacaagttg 30649770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 81 - 376
Target Start/End: Original strand, 30616213 - 30616506
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 180  Q
    |||||||||| || |||||||| ||  |||||||||  |||||| |||||||||| || |||||||| |||| ||||| |||||||||||| | |||| |    
T  30616213 gtgatcagatgtaatgcccccaataactcttaattt--aaaaggaaatttagttttcccccactagtacccc-actat-tctttaatttactggggtatt 30616308  T
Q  181 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatg---aa 277  Q
    || ||| || ||||||  |||| ||| ||||||||||||||||| ||||||| ||| ||||| |||||| || | |||||||| |||| ||||||   ||    
T  30616309 tatttt-attgaaatcaacatcgtttgattctatgatcactttagcatttagatcacaaaacctatatggtttgctatttatatcatacccaatgaaaaa 30616407  T
Q  278 tacacattcataggctttactagtgagtttaactctcttgggttcgaaatctgaact-tatgtcagacaatcccaagttcaaaaaataagacaagttgaa 376  Q
    ||||  ||||||||||||| |||||||||||||||||||| | || |||  | || | || |||| |||||||||||||| |||||||||||||||||||    
T  30616408 tacaatttcataggctttattagtgagtttaactctcttgaggtctaaaattcaaatataggtcaaacaatcccaagttc-aaaaataagacaagttgaa 30616506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 184 - 361
Target Start/End: Complemental strand, 40036209 - 40036031
Alignment:
Q  184 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 283  Q
    ||||||||||||| ||||| ||| ||| |||||||||||||  ||||| |||||||| ||||||||||| | |||||| |||||| || |||||||||||    
T  40036209 tttcatagaaatcagcatcatttgattatatgatcactttagaatttatgtcataaaccttatatgctttgctatttaaaacatacccgatgaatacaca 40036110  T
Q  284 ttcataggctttactagtgagtttaactctctt-gggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaa 361  Q
    | |||||||| |||||  ||||||||||||||| ||||  | ||||  ||| || ||||| ||| ||||||||||||||    
T  40036109 tccataggctctactatcgagtttaactctcttagggtctggaatcctaacataggtcaggcaaccccaagttcaaaaa 40036031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 142 - 318
Target Start/End: Original strand, 28450564 - 28450739
Alignment:
Q  142 actagtgcccccactatatctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaa 241  Q
    ||||||||| ||||||| |||||| ||||  |||||| ||| ||  |||||||||  |||  ||||||| |||| |||||||| ||||||||||||||||    
T  28450564 actagtgccaccactat-tcttta-tttaaagaggtatttatttagatagaaatcaacattgtttaattttatgctcactttagcatttaggtcataaaa 28450661  T
Q  242 -cttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaactctcttgg 318  Q
     | |||||| |  | ||||||||||||| |||||||| ||||||||| ||||| ||||||||||| ||||||||||||    
T  28450662 acctatatgatctgctatttataacatacccaatgaacacacattcacaggctctactagtgagtctaactctcttgg 28450739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 270 - 374
Target Start/End: Complemental strand, 25480207 - 25480102
Alignment:
Q  270 ccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagac 368  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||||    
T  25480207 ccaatgaatacacattcataggttctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagac 25480108  T
Q  369 aagttg 374  Q
    ||||||    
T  25480107 aagttg 25480102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 270 - 374
Target Start/End: Complemental strand, 25487813 - 25487708
Alignment:
Q  270 ccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagac 368  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||||    
T  25487813 ccaatgaatacacattcataggttctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagac 25487714  T
Q  369 aagttg 374  Q
    ||||||    
T  25487713 aagttg 25487708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 205 - 311
Target Start/End: Complemental strand, 27417585 - 27417479
Alignment:
Q  205 ttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgag 304  Q
    |||||||||| ||||||||| ||||| ||||||||||| || |||||| |  ||||||  |||| | |||||||| | ||||||| ||| ||||||||||    
T  27417585 ttaattctataatcactttagcatttcggtcataaaacctagatgctttgcaatttatggcatacctaatgaataaaaattcataagctctactagtgag 27417486  T
Q  305 tttaact 311  Q
    |||||||    
T  27417485 tttaact 27417479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 25480250 - 25480210
Alignment:
Q  208 attctatgatcactttaacatttaggtcataaaacttatat 248  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  25480250 attctatgatcactttagcatttaggtcataaaacctatat 25480210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 25487856 - 25487816
Alignment:
Q  208 attctatgatcactttaacatttaggtcataaaacttatat 248  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  25487856 attctatgatcactttagcatttaggtcataaaacctatat 25487816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 2e-82; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 80 - 374
Target Start/End: Original strand, 8886496 - 8886790
Alignment:
Q  80 agtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtac 179  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||||| |||||| |||   | ||||     
T  8886496 agtgatcagatatagtgcccccactagttcttaatttttagaaggaaatttattttgcccccactagtgcccccactat-tctttagtttcaaggggtaa 8886594  T
Q  180 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaata 279  Q
     || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||||||| ||||||||||    
T  8886595 atatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgttttgctatttataacatacccaatgaata 8886694  T
Q  280 cacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
     ||||||||||||| ||||| |||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||||||||||    
T  8886695 tacattcataggctctactaatgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttg 8886790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 82 - 374
Target Start/End: Complemental strand, 23662943 - 23662651
Alignment:
Q  82 tgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtactt 181  Q
    |||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||  ||||||||||||||||||| |||||| ||||  | ||||  |    
T  23662943 tgatcagatatagtgcccccactagttcttgatttttagaaggaaatttattttgctcccactagtgcccccactat-tctttagtttaaaggggtaaat 23662845  T
Q  182 aatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaataca 281  Q
    | || |||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |||| |||||||||| |    
T  23662844 atttacatagaaatcagcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatata 23662745  T
Q  282 cattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    |||||||||||| ||||||||||||||||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||| ||||||    
T  23662744 cattcataggctctactagtgagtttaactctcttggggtccagaatctaaatatagtacagacaatcccaagttcaaaaaataagataagttg 23662651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 81 - 319
Target Start/End: Original strand, 18470485 - 18470739
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----------------gtgcccccactatatctt 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||                 ||||||||||||| ||||    
T  18470485 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttattttgcccccactaatgtcgtgctcccactagtgcccccactat-tctt 18470583  T
Q  164 taatttacggaggtact-taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttat 262  Q
    || || | || |  | | || |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| | |||||    
T  18470584 tagttaaaggggtaaatatattttcatagaaatcgccatcttttaattctatgatcactttagcatttaggtcat-aaacctatatgcttcgctgtttat 18470682  T
Q  263 aacatatccaatgaatacacattcataggctttactagtgagtttaactctcttggg 319  Q
    | |||| | |||||||||||||||||||||| |||||||||||| ||||||||||||    
T  18470683 agcatacctaatgaatacacattcataggctctactagtgagttcaactctcttggg 18470739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 81 - 308
Target Start/End: Original strand, 3686657 - 3686900
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----------------gtgcccccactatatctt 163  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||                 ||||||||||||| ||||    
T  3686657 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgctcccactagtgcccccactat-tctt 3686755  T
Q  164 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttata 263  Q
    || |||   | ||||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| || | ||||||||    
T  3686756 tagtttcaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgctatttata 3686855  T
Q  264 acatatccaatgaatacacattcataggctttactagtgagttta 308  Q
     |||| |||||||||| ||||||||||||| ||||||||||||||    
T  3686856 gcatacccaatgaatatacattcataggctctactagtgagttta 3686900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 81 - 320
Target Start/End: Complemental strand, 12967367 - 12967113
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacca-----------------ctagtgcccccactatatctt 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||                 ||||| |||||||||| ||||    
T  12967367 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttattttgcccccaataatgttgcgcccccactagttcccccactat-tctt 12967269  T
Q  164 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttata 263  Q
    || || |  | ||||  || ||  |||||||||  |||| ||| ||||||||||||||||| ||||||||||||||||| |||||| ||   ||||||||    
T  12967268 tatttaaatg-ggtaaatatttatatagaaatcaacatcgttttattctatgatcactttagcatttaggtcataaaacctatatgattttctatttata 12967170  T
Q  264 acatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggt 320  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  12967169 acatacccaatgaatacacattcataggctctaccagtgagtttaattctcttgggt 12967113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 81 - 374
Target Start/End: Complemental strand, 24756011 - 24755737
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagg-gaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtac 179  Q
    ||||||||||||| |||||||| ||||||||||| |  | |||| |||||||||||  | ||||||||| ||||||||| |||||||||||| | |||||    
T  24756011 gtgatcagatatactgcccccaatagttcttaatat--acaaggagaatttagtttatccccactagtggccccactat-tctttaatttacaggggtac 24755915  T
Q  180 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaata 279  Q
    ||  || ||||||||||   ||| ||| | | |||||||||||||||||||| || ||||||| |||| ||               ||||||||||||||    
T  24755914 ttgctt-catagaaatcaatatcgtttgactttatgatcactttaacatttaagttataaaacctataagc---------------atatccaatgaata 24755831  T
Q  280 cacattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    |||||||||||| | |||  | |||||||||||||||||||| ||||||  ||||||||||| ||||||||||||| ||||||||||||||||||    
T  24755830 cacattcataggttctaccggcgagtttaactctcttgggtttgaaatccaaacttatgtcaaacaatcccaagtt-aaaaaataagacaagttg 24755737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 81 - 374
Target Start/End: Complemental strand, 24765008 - 24764734
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagg-gaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtac 179  Q
    ||||||||||||| |||||||| ||||||||||| |  | |||| |||||||||||  | ||||||||| ||||||||| |||||||||||| | |||||    
T  24765008 gtgatcagatatactgcccccaatagttcttaatat--acaaggagaatttagtttatccccactagtggccccactat-tctttaatttacaggggtac 24764912  T
Q  180 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaata 279  Q
    ||  || ||||||||||   ||| ||| | | |||||||||||||||||||| || ||||||| |||| ||               ||||||||||||||    
T  24764911 ttgctt-catagaaatcaatatcgtttgactttatgatcactttaacatttaagttataaaacctataagc---------------atatccaatgaata 24764828  T
Q  280 cacattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    |||||||||||| | |||  | |||||||||||||||||||| ||||||  ||||||||||| ||||||||||||| ||||||||||||||||||    
T  24764827 cacattcataggttctaccggcgagtttaactctcttgggtttgaaatccaaacttatgtcaaacaatcccaagtt-aaaaaataagacaagttg 24764734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 140 - 371
Target Start/End: Complemental strand, 48434921 - 48434689
Alignment:
Q  140 ccactagtgcccccactatatctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataa 239  Q
    ||||||||||||||||||| |  ||||||||  | || | |||||||||||||||||  |||||||| ||||||||||||| | |||||||| |||||||    
T  48434921 ccactagtgcccccactattttcttaatttaaaggggaatttaatttcatagaaatcatcatcttttgattctatgatcacataaacatttaagtcataa 48434822  T
Q  240 aacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttc-gaaatctgaacttatg 338  Q
    |||||||||||||  |  || ||| ||||  |||||||| || ||||| ||||| ||||| ||||||| ||||||||||| || | |||| |||  || |    
T  48434821 aacttatatgctttctagttaatatcatactcaatgaatgcatattcacaggctctactaatgagttttactctcttgggatctggaatccgaatatagg 48434722  T
Q  339 tcagacaatcccaagttcaaaaaataagacaag 371  Q
    ||||| ||| ||||||  |||||||||||||||    
T  48434721 tcagataattccaagtctaaaaaataagacaag 48434689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 7e-82; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 81 - 374
Target Start/End: Original strand, 560037 - 560330
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 180  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||| |||   | ||||      
T  560037 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactagtgcccccactat-tctttagtttcaaggggtaaa 560135  T
Q  181 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 280  Q
    || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| || | |||||||| |||| ||||||||||     
T  560136 tatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgctatttatagcatacccaatgaatat 560235  T
Q  281 acattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||||||||||    
T  560236 acattcataggctctactagtgagttcaactctcttgggatccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttg 560330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 81 - 374
Target Start/End: Original strand, 9911892 - 9912178
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 180  Q
    |||||||||| ||||||||||||||||  ||||| |  ||  ||||||||| ||| || ||||||||||| ||||||| |||||||||||||| ||||||    
T  9911892 gtgatcagatgtagtgcccccactagtcattaatatacaag-gggaatttaatttacctccactagtgcctccactat-tctttaatttacgggggtact 9911989  T
Q  181 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 280  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| |||| ||||||||||||| | ||| |||||    
T  9911990 ta-tttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatgtttcgctatttataacatacctaattaatac 9912088  T
Q  281 acattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    |||||||||| || ||||||| |||||||||   |  |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  9912089 acattcatagactctactagtaagtttaact---tgaggttcgaaatctgaacttatgtcaaacaatcccaagttc-aaaaataagacaagttg 9912178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 81 - 374
Target Start/End: Original strand, 26670549 - 26670859
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacc-----------------actagtgcccccactatatctt 163  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||                 ||||||||||||||||| ||||    
T  26670549 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccgataatgttgtgctcccactagtgcccccactat-tctt 26670647  T
Q  164 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttata 263  Q
    || ||||  | ||||  || || ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||    
T  26670648 tagtttaaaggggtaaatatttacatagaaatcggtgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttata 26670747  T
Q  264 acatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaa 362  Q
     |||| |||||||||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||    
T  26670748 gcatacccaatgaatatacattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaa 26670847  T
Q  363 taagacaagttg 374  Q
    ||||||||||||    
T  26670848 taagacaagttg 26670859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 81 - 374
Target Start/End: Original strand, 26942146 - 26942456
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacc-----------------actagtgcccccactatatctt 163  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||                 ||||||||||||||||| ||||    
T  26942146 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccgataatgttgtgctcccactagtgcccccactat-tctt 26942244  T
Q  164 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttata 263  Q
    || ||||  | ||||  || || ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||    
T  26942245 tagtttaaaggggtaaatatttacatagaaatcggtgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttata 26942344  T
Q  264 acatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaa 362  Q
     |||| |||||||||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||    
T  26942345 gcatacccaatgaatatacattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaa 26942444  T
Q  363 taagacaagttg 374  Q
    ||||||||||||    
T  26942445 taagacaagttg 26942456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 140 - 375
Target Start/End: Original strand, 39521774 - 39522009
Alignment:
Q  140 ccactagtgcccccactatatctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataa 239  Q
    ||||||||||||||||||| |||||| ||||  | ||||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39521774 ccactagtgcccccactat-tctttagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataa 39521872  T
Q  240 aacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatg 338  Q
    ||| |||||| |||| |||||||| |||| |||||||||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||      
T  39521873 aacctatatgtttcgctatttatagcatacccaatgaatatacattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatagt 39521972  T
Q  339 tcagacaatcccaagttcaaaaaataagacaagttga 375  Q
     || ||||| |||||||||||||||||||||||||||    
T  39521973 ccacacaattccaagttcaaaaaataagacaagttga 39522009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 81 - 374
Target Start/End: Complemental strand, 36939040 - 36938730
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----------------gtgcccccactatatctt 163  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||                 ||||||||||||| ||||    
T  36939040 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgctcccactagtgcccccactat-tctt 36938942  T
Q  164 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttata 263  Q
    || |||   | ||||  || || ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| | |||||| || | ||||||||    
T  36938941 tagtttcgaggggtaaatatttacatagaaatcggcgtcttttaattctataatcactttaacatttaggtcataaagcctatatgttttgctatttata 36938842  T
Q  264 acatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaa 362  Q
     |||| |||||||||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||    
T  36938841 gcatacccaatgaatatacattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaa 36938742  T
Q  363 taagacaagttg 374  Q
    ||||||||||||    
T  36938741 taagacaagttg 36938730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 80 - 380
Target Start/End: Original strand, 41999975 - 42000290
Alignment:
Q  80 agtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----------------gtgcccccactatatct 162  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||                 ||||||||||||| |||    
T  41999975 agtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgctcccactagtgcccccactat-tct 42000073  T
Q  163 ttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttat 262  Q
    ||| ||||  | ||||  || || ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||| |||||| || | |||||||    
T  42000074 ttagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacat--aggtcataaaacctatatgttttgctatttat 42000171  T
Q  263 aacatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaa 361  Q
    | |||| |||||||||| |||||||||| || |||||||||||| |||||||||||| || | ||||| ||  ||| | ||||||||| |||||||||||    
T  42000172 agcatacccaatgaatatacattcatagactctactagtgagttcaactctcttggggtccagaatctaaatatattttagacaatccgaagttcaaaaa 42000271  T
Q  362 ataagacaagttgaattat 380  Q
    ||||||||||||| |||||    
T  42000272 ataagacaagttggattat 42000290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 81 - 319
Target Start/End: Original strand, 36426912 - 36427166
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacca-----------------ctagtgcccccactatatctt 163  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||                 |||||||||||||||| ||||    
T  36426912 gtgatcaaatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccaataatgttgtgctcccactagtgcccccactat-tctt 36427010  T
Q  164 taatttacggaggtactta-atttc-atagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttattta 261  Q
    || || | || ||||  || ||||| |||||||||| |||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| | ||||    
T  36427011 tagttaaagg-ggtaaatatatttccatagaaatcgacatcttttaattctatgatcactttagcatttaagtcataaa-cttatatgcttcgctgttta 36427108  T
Q  262 taacatatccaatgaatacacattcataggctttactagtgagtttaactctcttggg 319  Q
    || |||| | |||||||||||||||||||||| |||||||||||| ||||||||||||    
T  36427109 tagcatacctaatgaatacacattcataggctctactagtgagttcaactctcttggg 36427166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 184 - 316
Target Start/End: Complemental strand, 13585167 - 13585035
Alignment:
Q  184 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 283  Q
    ||||||||||||| | ||| ||| ||||||||||||||||| | || |||||||||||| |||||||||   | ||||   |||| ||||||||||||||    
T  13585167 tttcatagaaatcagaatcatttgattctatgatcactttagctttaaggtcataaaacctatatgctttactgtttaaggcatacccaatgaatacaca 13585068  T
Q  284 ttcataggctttactagtgagtttaactctctt 316  Q
    |||||||||| |||| |  ||||| ||||||||    
T  13585067 ttcataggctctacttgctagttttactctctt 13585035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 39521698 - 39521748
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaattta 131  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  39521698 gtgatcagatatagtgcccccactagttcttaatttttagaaggaaattta 39521748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 281 - 374
Target Start/End: Complemental strand, 23978790 - 23978696
Alignment:
Q  281 acattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtc-agacaatcccaagttcaaaaaataagacaagttg 374  Q
    ||||||||||||| ||||||||||||||||||||||||  || |||  | || |   ||| |||||||| |||||||||||||||||||||||||    
T  23978790 acattcataggctctactagtgagtttaactctcttggagtccaaaattcaaatatagtcaagacaatctcaagttcaaaaaataagacaagttg 23978696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 319
Target Start/End: Original strand, 17507719 - 17507854
Alignment:
Q  184 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 283  Q
    |||||||||| || ||||| ||| |||||||||||  ||||   || ||||| |||||| |||| ||||   ||||||   |||| ||||||||||||||    
T  17507719 tttcatagaagtcagcatcatttgattctatgatcgttttagatttcaggtcgtaaaacctataagctttactatttaaggcatacccaatgaatacaca 17507818  T
Q  284 ttcataggctttactagtgagtttaactctcttggg 319  Q
    |||||||||| |||| |  ||||| ||||| |||||    
T  17507819 ttcataggctctacttgctagtttgactcttttggg 17507854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 319
Target Start/End: Complemental strand, 24773807 - 24773672
Alignment:
Q  184 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 283  Q
    |||||||||| || ||||| ||| |||||||||||  ||||   || ||||| |||||| |||| ||||   ||||||   |||| ||||||||||||||    
T  24773807 tttcatagaagtcagcatcatttgattctatgatcgttttagatttcaggtcgtaaaacctataggctttactatttaaggcatacccaatgaatacaca 24773708  T
Q  284 ttcataggctttactagtgagtttaactctcttggg 319  Q
    |||||||||| |||| |  ||||| ||||| |||||    
T  24773707 ttcataggctctacttgctagtttgactcttttggg 24773672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 154; Significance: 3e-81; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 123 - 374
Target Start/End: Original strand, 81653 - 81896
Alignment:
Q  123 gggaatttagtttgccaccactagtgcccccactatatctttaatttac-ggaggtacttaatttcatagaaatcggcatcttttaattctatgatcact 221  Q
    ||||||||||||| || |||||    |||||||||| |||||||||||| || |||||||| || |||||||||| ||||||||||||||||||||||||    
T  81653 gggaatttagtttacccccact----cccccactat-tctttaatttacagggggtacttactt-catagaaatcagcatcttttaattctatgatcact 81746  T
Q  222 ttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggtt 321  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  81747 ttaacatttaggtcataaaacctatatgcttcgttatttataacatatctaatgaatacacattcataggctctactagtgagtttatctctcttgggtt 81846  T
Q  322 cgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    ||||||  |||||||||||   |||||||||||||||||||||||||||||||    
T  81847 cgaaattcgaacttatgtc---caatcccaagttcaaaaaataagacaagttg 81896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 3e-75; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 81 - 374
Target Start/End: Complemental strand, 8320156 - 8319869
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 180  Q
    |||||||||||||||||||||||| |||||||||     || ||||||||||||| || ||||||||||||||||||| |||||||||||| | ||||||    
T  8320156 gtgatcagatatagtgcccccactggttcttaatac---aaggggaatttagtttacccccactagtgcccccactat-tctttaatttacaggggtact 8320061  T
Q  181 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 280  Q
     |  ||||||||||||  |||  ||||| | ||||||||||||| |||||| |||||||||| |||| |||||  || ||||| |||||||||||||| |    
T  8320060 -agcttcatagaaatcaacataatttaactttatgatcactttagcatttaagtcataaaacctataagcttccctaattatagcatatccaatgaatgc 8319962  T
Q  281 acattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  8319961 acattcataggctctactagtgagtttaactctcttggcttcgaaatccgaacttatgtcagacaatcccaagttca-aaaataagacaagttg 8319869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 81 - 374
Target Start/End: Complemental strand, 4239856 - 4239558
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----gtgcccccactatatctttaatttacggag 175  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||     ||||||||||||| |||||| |||   | |    
T  4239856 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgcccccactat-tctttagtttcaaggg 4239758  T
Q  176 gtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatg 275  Q
    |||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| || | |||||||| |||| ||||||    
T  4239757 gtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgctatttatagcatacccaatg 4239658  T
Q  276 aatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    |||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||||||||||    
T  4239657 aatatacattcataggctgtactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttg 4239558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 81 - 374
Target Start/End: Complemental strand, 25369262 - 25368973
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 180  Q
    |||||||||||||||||||||||||||||||||| |  ||  ||||||||| ||| || |||||||||||| |||||| |||||||||||| | |||||     
T  25369262 gtgatcagatatagtgcccccactagttcttaatatacaag-gggaatttaatttacccccactagtgccctcactat-tctttaatttacaggggtacc 25369165  T
Q  181 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 280  Q
     |  ||||||||||||  |||| ||| | | ||||||||||||| ||||||||||||||||| |||| ||||   || |||||  ||| ||||||||| |    
T  25369164 -agcttcatagaaatcaacatcgtttgactttatgatcactttagcatttaggtcataaaacctataagctttcctaattatattatacccaatgaatgc 25369066  T
Q  281 acattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||  ||||| ||||||  |||||||||||||| ||||||||||||||||    
T  25369065 acattcataggctctactagtgagtttaactttcttgggttcgaaattcgaactcatgtcaagcaatcccaagttca-aaaataagacaagttg 25368973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 81 - 374
Target Start/End: Complemental strand, 40127421 - 40127111
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----------------gtgcccccactatatctt 163  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||                 ||||||||||||| ||||    
T  40127421 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgctcccgctagtgcccccactat-tctt 40127323  T
Q  164 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttata 263  Q
    || ||||  | ||||  || || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||    
T  40127322 tagtttaaaggggtaaatatttacattgaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgttttgctatttata 40127223  T
Q  264 acatatccaatgaatacacattcataggctttactagtgagtttaactctctt-gggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaa 362  Q
     |||| |||||||||| ||||||||||||| |||||||||||| ||||||||| |||| | |||||| ||  ||   |||||||| ||||||| ||||||    
T  40127222 gcatacccaatgaatatacattcataggctctactagtgagttcaactctcttggggtccaaaatctaaatatagtccagacaattccaagtttaaaaaa 40127123  T
Q  363 taagacaagttg 374  Q
    ||||||||||||    
T  40127122 taagacaagttg 40127111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 81 - 373
Target Start/End: Complemental strand, 23083411 - 23083114
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----gtgcccccactatatctttaatttacggag 175  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||| || |   ||     ||||||||||||| ||| || ||||  | |    
T  23083411 gtgatcagatatagttcccccactatttcttaatttttagaagggaatttatttttccgcagataatgttgtgcccccactat-tctgtagtttaaaggg 23083313  T
Q  176 gtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatg 275  Q
    |||  ||  | ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||| |||| ||||||    
T  23083312 gtaaatatctacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtaataaaacctatatgtttcgctatttatagcatacccaatg 23083213  T
Q  276 aatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagtt 373  Q
    |||| ||||||||||||| |||| ||||||| |||||||||||| || | ||||| ||  ||   ||||||||||||||||||||||||||||||||||    
T  23083212 aatatacattcataggctctactggtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagtt 23083114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 187 - 319
Target Start/End: Complemental strand, 38184029 - 38183897
Alignment:
Q  187 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattc 286  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||  |||  |||||||| |||| |||||||||||||||||    
T  38184029 catagaaatcgacatcttttaattctatgatcactttagcatttaggtcataaaacctatatatttccctatttatagcatacccaatgaatacacattc 38183930  T
Q  287 ataggctttactagtgagtttaactctcttggg 319  Q
    ||||||| ||  |||||||| ||||||||||||    
T  38183929 ataggctctatcagtgagttcaactctcttggg 38183897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 184 - 306
Target Start/End: Original strand, 17023623 - 17023744
Alignment:
Q  184 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 283  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| | |||||  |||| | ||||||||||||    
T  17023623 tttcatagaaatcagcatcttttaattttatgatcactttaacatttaggtcat-aaacctatatgcttcgctgtttattgcatacctaatgaatacaca 17023721  T
Q  284 ttcataggctttactagtgagtt 306  Q
    |||||||||| ||||||||||||    
T  17023722 ttcataggctctactagtgagtt 17023744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 184 - 306
Target Start/End: Original strand, 17554116 - 17554237
Alignment:
Q  184 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 283  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| | |||||  |||| | ||||||||||||    
T  17554116 tttcatagaaatcagcatcttttaattttatgatcactttaacatttaggtcat-aaacctatatgcttcgctgtttattgcatacctaatgaatacaca 17554214  T
Q  284 ttcataggctttactagtgagtt 306  Q
    |||||||||| ||||||||||||    
T  17554215 ttcataggctctactagtgagtt 17554237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 187 - 317
Target Start/End: Original strand, 34117025 - 34117155
Alignment:
Q  187 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattc 286  Q
    ||||||||||  |||| ||| ||||||||||||||||| ||||||||||||||||| |||||| ||   ||||||||||||| |||||||||||||||||    
T  34117025 catagaaatcaacatcattttattctatgatcactttagcatttaggtcataaaacctatatgattttctatttataacatacccaatgaatacacattc 34117124  T
Q  287 ataggctttactagtgagtttaactctcttg 317  Q
    ||||||| |||||||||||| |||| |||||    
T  34117125 ataggctctactagtgagttcaactttcttg 34117155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 135 - 252
Target Start/End: Complemental strand, 4539975 - 4539858
Alignment:
Q  135 tgccaccactagtgcccccactatatctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggt 234  Q
    |||| |||| |||||||||||||| |  ||||||||  | || | |||||||||||||||||  |||| ||| ||||||||||||| | |||||||||||    
T  4539975 tgcccccaccagtgcccccactattttcttaatttaaaggggaatttaatttcatagaaatcatcatcgtttgattctatgatcacatcaacatttaggt 4539876  T
Q  235 cataaaacttatatgctt 252  Q
    | |||||| |||||||||    
T  4539875 cgtaaaacctatatgctt 4539858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 180 - 371
Target Start/End: Original strand, 19952762 - 19952954
Alignment:
Q  180 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaata 279  Q
    ||||||||| |||||||  |||| ||| ||||||||||||| |||||||||| |||||||||| ||||   ||     || ||  |||| | ||| |||     
T  19952762 ttaatttcaaagaaatcatcatcgtttgattctatgatcacattaacatttaagtcataaaacctatacattttccggttaatttcatacctaataaatt 19952861  T
Q  280 cacattcataggctttactagtgagtttaactctcttggg-ttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaag 371  Q
    |||||||||||||| || |||||||||| ||||||||||| || | |||| |||  || | || |||||||||||| ||||||||||||||||    
T  19952862 cacattcataggctctattagtgagttttactctcttgggatttggaatccgaagataggccaaacaatcccaagtccaaaaaataagacaag 19952954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 17023505 - 17023560
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttg 136  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||    
T  17023505 gtgatcagatatagtgcccccactagttcataatttttaatagggaatttattttg 17023560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 17553998 - 17554053
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttg 136  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||    
T  17553998 gtgatcagatatagtgcccccactagttcataatttttaatagggaatttattttg 17554053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 4e-74; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 81 - 374
Target Start/End: Original strand, 25853676 - 25853971
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagttt--gccaccactagtgcccccactatatctttaatttacggaggta 178  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||  ||  ||||||||||||||||||| |||||| ||||  | ||||    
T  25853676 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttttgctcccactagtgcccccactat-tctttagtttaaaggggta 25853774  T
Q  179 cttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaat 278  Q
       | || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| ||||  ||||||||    
T  25853775 aagatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatactcaatgaat 25853874  T
Q  279 acacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    | ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||||||||||    
T  25853875 atacattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttg 25853971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 82 - 374
Target Start/End: Original strand, 10138571 - 10138884
Alignment:
Q  82 tgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacc-----------------actagtgcccccactatatcttt 164  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||                 ||||||||||||||||| |||||    
T  10138571 tgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccggtaatgttttgctcccactagtgcccccactat-tcttt 10138669  T
Q  165 aatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataa 264  Q
    | ||||  | ||||  || || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||     
T  10138670 agtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaact-atatgtttcgctatttatag 10138768  T
Q  265 catatc-----caatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaa 358  Q
    |||| |     ||||||||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||| ||    
T  10138769 cataccatacccaatgaatatacattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagtttaa 10138868  T
Q  359 aaaataagacaagttg 374  Q
    ||||||||||||||||    
T  10138869 aaaataagacaagttg 10138884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 228 - 378
Target Start/End: Complemental strand, 16750129 - 16749979
Alignment:
Q  228 tttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aa 326  Q
    ||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| ||||||||||| |||||||||||| |||||||||||| || | ||    
T  16750129 tttaggtcataaaacctatatgcttcgctatttataacatacccaatgaatacatattcataggctctactagtgagttcaactctcttggggtccagaa 16750030  T
Q  327 tctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttgaatt 378  Q
    ||  ||  ||   ||||||||||||||||| || ||||||||||||||||||    
T  16750029 tccaaatatagtccagacaatcccaagttc-aataataagacaagttgaatt 16749979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 211 - 322
Target Start/End: Complemental strand, 47453563 - 47453452
Alignment:
Q  211 ctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaac 310  Q
    |||||||||||||||||||||||||||||||| |||||| ||  |||||||||||||| ||||||||||||||||||| | || |||||||||||| |||    
T  47453563 ctatgatcactttaacatttaggtcataaaacctatatgattttttatttataacatacccaatgaatacacattcattgactctactagtgagttcaac 47453464  T
Q  311 tctcttgggttc 322  Q
    |||| |||||||    
T  47453463 tctcctgggttc 47453452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 184 - 319
Target Start/End: Original strand, 18809820 - 18809953
Alignment:
Q  184 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 283  Q
    ||||||| ||| || |||| ||| |||||| ||| |||||| |||||||||||||||||  ||||| || | |||||||| |||| || |||||||||||    
T  18809820 tttcatacaaaccgacatcatttgattctaagattactttagcatttaggtcataaaac--atatgttttgctatttatagcatacccgatgaatacaca 18809917  T
Q  284 ttcataggctttactagtgagtttaactctcttggg 319  Q
    |||||||| |||||||| |||  ||||| |||||||    
T  18809918 ttcataggatttactagcgagagtaactttcttggg 18809953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 319
Target Start/End: Original strand, 5727762 - 5727897
Alignment:
Q  184 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 283  Q
    |||||||||| || ||||| ||| |||||||||||  ||||   || ||||| |||||| |||| ||||   ||||||   |||| ||||||||||||||    
T  5727762 tttcatagaagtcagcatcatttgattctatgatcgatttagatttcaggtcgtaaaacctataggctttactatttaaggcatacccaatgaatacaca 5727861  T
Q  284 ttcataggctttactagtgagtttaactctcttggg 319  Q
    |||||||||| |||| |  ||||| ||||| |||||    
T  5727862 ttcataggctctacttgctagtttgactcttttggg 5727897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 2e-73; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 82 - 374
Target Start/End: Original strand, 31272042 - 31272336
Alignment:
Q  82 tgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtactt 181  Q
    |||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||  ||||||||||||||||||| |||||| ||||  | ||||  |    
T  31272042 tgatcagatatagtgcccccactagttcttgatttttagaaggaaatttattttgctcccactagtgcccccactat-tctttagtttaaaggggtaaat 31272140  T
Q  182 aatttcatagaaatcggcatctttta--attctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaata 279  Q
    | || |||||||||| || |||||||  ||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |||| ||||||||||    
T  31272141 atttacatagaaatcagcgtcttttataattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaata 31272240  T
Q  280 cacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
     ||||||||||||| ||||||||||||||||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||| ||||||    
T  31272241 tacattcataggctctactagtgagtttaactctcttggggtccagaatctaaatatagtacagacaatcccaagttcaaaaaataagataagttg 31272336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 82 - 370
Target Start/End: Complemental strand, 37261389 - 37261101
Alignment:
Q  82 tgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtactt 181  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||  |||||||||||||| |||| |||||| ||||  | ||||  |    
T  37261389 tgatcagatatagtgcccccactagttcttaatttttagaagagaatttattttgctcccactagtgcccccgctat-tctttagtttaaaggggtaaat 37261291  T
Q  182 aatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaataca 281  Q
    | || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |||| |||||||||| |    
T  37261290 atttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatata 37261191  T
Q  282 cattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaa 370  Q
    |||||||| ||| |||||| ||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||| ||||||||||||||    
T  37261190 cattcatatgctctactagagagttcaactctcttggggtccataatctaaatatagtccagacaatcccaagtttaaaaaataagacaa 37261101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 75 - 374
Target Start/End: Original strand, 19105280 - 19105593
Alignment:
Q  75 gatatagtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----gtgcccccacta---------tat 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || ||||||     |||| |||||||         |||    
T  19105280 gatatagtgatcagatatagtgcccccactagttcttaatttttaaaaaggaatttattttacccccactaatttcgtgctcccactagtgccccactat 19105379  T
Q  161 -ctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatt 259  Q
     ||||| || | |||  ||  || || ||||||||||  |||||||||  ||||||||||||||| ||||||||||||||||| |||||| || ||||||    
T  19105380 tctttagttaaaggat-taaatatttacatagaaatcaacatcttttatatctatgatcactttagcatttaggtcataaaacctatatgttttgttatt 19105478  T
Q  260 tataacatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggtt--cgaaatctgaacttatgtcagacaatcccaagttca 357  Q
    |||| ||||||||||||||||||||||||||  |||||||||||||| |||| ||||||| |  |||| ||  ||  ||  ||||||||||||||||||     
T  19105479 tatagcatatccaatgaatacacattcatagaatttactagtgagttcaactttcttggggtcccgaattc-aaatatagttcagacaatcccaagttc- 19105576  T
Q  358 aaaaataagacaagttg 374  Q
    |||||||||||||||||    
T  19105577 aaaaataagacaagttg 19105593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 187 - 319
Target Start/End: Complemental strand, 32222590 - 32222458
Alignment:
Q  187 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattc 286  Q
    |||| |||||| |||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||  ||||||||||| ||||    
T  32222590 catataaatcgacatcgttttattctatgatcactttagcatttaggtcataaaacctatatgcttcgctatttataacatactcaatgaatacatattc 32222491  T
Q  287 ataggctttactagtgagtttaactctcttggg 319  Q
    ||||||| |||||||||||| |||| |||||||    
T  32222490 ataggctctactagtgagttcaactttcttggg 32222458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 187 - 319
Target Start/End: Complemental strand, 33465747 - 33465615
Alignment:
Q  187 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattc 286  Q
    |||||| ||||  ||||||||||||||||||||||||| ||||||||||||||||| |||||| |||| |||||||| |||| |||||||||||| ||||    
T  33465747 catagatatcgatatcttttaattctatgatcactttagcatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatacatattc 33465648  T
Q  287 ataggctttactagtgagtttaactctcttggg 319  Q
    ||||||| |||||||||||| |||||| |||||    
T  33465647 ataggctctactagtgagttcaactcttttggg 33465615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 203 - 319
Target Start/End: Original strand, 39319071 - 39319187
Alignment:
Q  203 ttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtg 302  Q
    |||||||||||||||||||||| |||| ||||||||||||| |||||||||| || |||||||||| ||||| |||||| ||||||||||| ||||||||    
T  39319071 ttttaattctatgatcactttagcattgaggtcataaaactgatatgcttcgctaattataacatacccaattaatacatattcataggctctactagtg 39319170  T
Q  303 agtttaactctcttggg 319  Q
    |||||||||||||||||    
T  39319171 agtttaactctcttggg 39319187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 212 - 351
Target Start/End: Original strand, 41815422 - 41815556
Alignment:
Q  212 tatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaact 311  Q
    ||||||||||||| ||||||||||||||||| |||| |||||  || ||||| |     |||||||| |||||||||||||| |||||||||||||||||    
T  41815422 tatgatcactttagcatttaggtcataaaacctataagcttccctaattatacc-----caatgaattcacattcataggctctactagtgagtttaact 41815516  T
Q  312 ctcttgggttcgaaatctgaacttatgtcagacaatccca 351  Q
    |||||||| |||||||  |||||||||||| |||||||||    
T  41815517 ctcttgggatcgaaattcgaacttatgtcaaacaatccca 41815556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 125 - 311
Target Start/End: Original strand, 16951137 - 16951322
Alignment:
Q  125 gaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcacttta 224  Q
    ||||||| |||||| |||||||||||| |||||| ||||||||||||   |||| ||  ||||| | | ||| | ||  ||| |||||| ||| ||||||    
T  16951137 gaatttattttgcccccactagtgccctcactat-tctttaatttacaagggtatttcttttcacatatatcagtataattttattctaagattacttta 16951235  T
Q  225 acatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaact 311  Q
     ||||| ||||||||||| || |||||  |||||||||  |||||||||||||| |||||| ||||||| | |||||||||||||||    
T  16951236 gcatttcggtcataaaacctagatgctatgttatttatggcatatccaatgaatgcacatttataggctctgctagtgagtttaact 16951322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 33465880 - 33465816
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta 145  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||||||| ||| || ||||||    
T  33465880 gtgatcagatatagtgcccccactatttcataatttttaaaaaggaatttatttttcccccacta 33465816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 39318923 - 39318980
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaa-tttttaaaagggaatttagtttgc 137  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||||| |||| |||||    
T  39318923 gtgatcagatatagttcccccacttgttcttaattttttaaaagggattttattttgc 39318980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 15134794 - 15134740
Alignment:
Q  187 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaa 241  Q
    ||||||||||| |||| ||||| |||||| |||||||  ||||||||||||||||    
T  15134794 catagaaatcgacatcgtttaagtctatgctcacttttgcatttaggtcataaaa 15134740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 82 - 374
Target Start/End: Complemental strand, 712 - 422
Alignment:
Q  82 tgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact- 180  Q
    |||||||||||||||||||||||||||| |||| |  ||  ||||||||||||| || |||||||||| |||||||| |||||||||||| | |||||      
T  712 tgatcagatatagtgcccccactagttcataatatacaag-gggaatttagtttacccccactagtgctcccactat-tctttaatttacaggggtacaa 615  T
Q  181 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 280  Q
    | | |||||| ||||| ||||| ||| | | ||||||||| ||| ||||||||||||||||| |||| |||||  || ||||| |||| |||||||||||    
T  614 ttacttcataaaaatcagcatcatttgactttatgatcacgttagcatttaggtcataaaacatataagcttccctaattatagcatacccaatgaatac 515  T
Q  281 acattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    |||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  514 acattcatagactctactagtgagtttaacgctcttgggttcgaaatctgaacttatgtc-gacaataccaagttcaaaaaataagacaagttg 422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 81 - 374
Target Start/End: Complemental strand, 49554 - 49261
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacca-ctagtgcccccactatatctttaatttacggaggtac 179  Q
    ||||||||||||| | |||||||||||||||||| |  ||  ||||||||||||| || ||| |||||||||||||||| |||||||||||| | ||||     
T  49554 gtgatcagatatactacccccactagttcttaatatacaag-gggaatttagtttacccccaactagtgcccccactat-tctttaatttacaggggtag 49457  T
Q  180 t--taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaa 277  Q
    |  ||  ||||||||||||  |||| ||| | | |||| ||| |||| ||||||||||||||||| |||| |||||  || ||||| |||| ||||||||    
T  49456 tactagcttcatagaaatcaacatcgtttgactttatggtcaatttagcatttaggtcataaaacctataagcttccctaattatagcatacccaatgaa 49357  T
Q  278 tacacattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  49356 tgtacattcataggctttactagtgagtttaactctcttgggttcgaaatccgaacttatgtcagacaatcccaagttca-aaaataagacaagttg 49261  T

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Target: scaffold0070 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 81 - 374
Target Start/End: Original strand, 61861 - 62150
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 180  Q
    |||||||||||||||||||||||||||||||||| |  ||  ||||||||| ||| || |||||||||||| |||||| |||||||||||| | |||||     
T  61861 gtgatcagatatagtgcccccactagttcttaatatacaag-gggaatttaatttacccccactagtgccctcactat-tctttaatttacaggggtacc 61958  T
Q  181 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 280  Q
     |  ||||||||||||  |||| ||| | | ||||||||||||| ||||||||||||||||| |||| ||||   || |||||  ||| ||||||||| |    
T  61959 -agcttcatagaaatcaacatcgtttgactttatgatcactttagcatttaggtcataaaacctataagctttcctaattatattatacccaatgaatgc 62057  T
Q  281 acattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 374  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||  ||||| ||||||  ||||||||||||| |||||||||||||||||    
T  62058 acattcataggctctactagtgagtttaactttcttgggttcgaaattcgaactcatgtcaagcaatcccaagttc-aaaaataagacaagttg 62150  T

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Target: scaffold0070; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 66063 - 66096
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaat 114  Q
    ||||||||||||||||||||||||||||||||||    
T  66063 gtgatcagatatagtgcccccactagttcttaat 66096  T

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Target: chr7 (Bit Score: 86; Significance: 1e-40; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 187 - 375
Target Start/End: Original strand, 21667959 - 21668148
Alignment:
Q  187 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattc 286  Q
    ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||  |||||| |||  |||||||||||||  ||||||||||||||||    
T  21667959 catagaaatcgacatcttttaattatatgatcactttagcatttaggtcataaaatctatatgattcactatttataacatactcaatgaatacacattc 21668058  T
Q  287 ataggctttactagtgagtttaactctcttg-ggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttga 375  Q
    ||||||| |||||||||||| |||||||||| ||||| |||||  ||  ||    ||||||||| |||| |||||||||||||| |||||    
T  21668059 ataggctctactagtgagttcaactctcttgaggttcaaaatccaaatataacctagacaatcctaagtacaaaaaataagacatgttga 21668148  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 216 - 319
Target Start/End: Complemental strand, 24147892 - 24147789
Alignment:
Q  216 atcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaactctct 315  Q
    ||||||||| ||| |  |||||||||| || |||||| |||||||||  ||||||||||||||| |||||||||| |||||||||||||||||||||| |    
T  24147892 atcactttagcatatcagtcataaaacctagatgctttgttatttatgtcatatccaatgaatatacattcatagactttactagtgagtttaactcttt 24147793  T
Q  316 tggg 319  Q
    ||||    
T  24147792 tggg 24147789  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 212 - 319
Target Start/End: Complemental strand, 10389739 - 10389632
Alignment:
Q  212 tatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaact 311  Q
    ||||||| ||||| ||||||||| ||||||  |||||| |||  |||||||| |||| ||| |||||||||||||||||||| ||| |||||||| ||||    
T  10389739 tatgatccctttagcatttaggtgataaaatctatatgtttcactatttatagcatacccattgaatacacattcataggctctaccagtgagttcaact 10389640  T
Q  312 ctcttggg 319  Q
    ||||||||    
T  10389639 ctcttggg 10389632  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 199 - 314
Target Start/End: Original strand, 15984856 - 15984971
Alignment:
Q  199 catcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttact 298  Q
    |||| ||| ||| ||||| ||||||| ||||||| ||||||||||||||||||| | |||||||  |||| |||||||||||| ||||||| ||| || |    
T  15984856 catcgtttgattttatgaccactttagcatttagttcataaaacttatatgctttgctatttatgtcatacccaatgaatacaaattcataagctctatt 15984955  T
Q  299 agtgagtttaactctc 314  Q
    |  |||||||||||||    
T  15984956 aacgagtttaactctc 15984971  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 147 - 317
Target Start/End: Complemental strand, 1289789 - 1289622
Alignment:
Q  147 tgcccccactatatctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttat 246  Q
    |||||||||||| |||| |||||| | ||| | | |||||||||||||||  |||| ||| |||||||||| |||||| || ||| |||| ||||| ||     
T  1289789 tgcccccactatttctt-aatttaagcaggaattaaatttcatagaaatcaacatcatttgattctatgattactttagca-ttatgtca-aaaacctac 1289693  T
Q  247 atgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaactctcttg 317  Q
    |||||| ||||||  ||||||| ||| ||||| |||||||||| ||| || |||||||||| |||||||||    
T  1289692 atgctttgttattactaacatacccagtgaatgcacattcataagctctaatagtgagttttactctcttg 1289622  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 21667830 - 21667878
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatt 129  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||    
T  21667830 gtgatcagatattgtgcccccactaattcttaatttttaaaagggaatt 21667878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 10389892 - 10389827
Alignment:
Q  80 agtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta 145  Q
    |||||| |||||||||||||| ||||||||||||||||||||||  |||||| ||| || ||||||    
T  10389892 agtgattagatatagtgccccaactagttcttaatttttaaaagacaatttatttttcccccacta 10389827  T

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Target: chr6 (Bit Score: 80; Significance: 4e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 81 - 319
Target Start/End: Complemental strand, 15998146 - 15997909
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaattttt-aaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtac 179  Q
    ||||||||||||| ||||| |||||| ||||||||||| ||||||||||||| | | || ||||||||||||||||||| ||||||| |||| | |||||    
T  15998146 gtgatcagatataatgccctcactagctcttaattttttaaaagggaatttattgttcc-ccactagtgcccccactat-tctttaagttacaggggtac 15998049  T
Q  180 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaata 279  Q
    |||  ||| ||||  || |||||  ||  |||||||||||||||| ||||||||||||||||| ||||||||||   ||||| | ||||   ||||||||    
T  15998048 ttatcttcgtagacgtcagcatcgattgtttctatgatcactttagcatttaggtcataaaacctatatgcttcacaatttaaagcatacttaatgaata 15997949  T
Q  280 cacattcataggctttactagtgagtttaactctcttggg 319  Q
    |||||||||||||| | |||| ||||| || |||||||||    
T  15997948 cacattcataggctctgctagcgagttcaagtctcttggg 15997909  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 16836367 - 16836324
Alignment:
Q  81 gtgatcagatatagtgcccccactagttcttaatttttaaaagg 124  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  16836367 gtgatcagatatagtgcccccactagttcttaatttttagaagg 16836324  T

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Target: scaffold0067 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 31099 - 31016
Alignment:
Q  210 tctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggct 293  Q
    ||||||||||||||| | |||| |||||||||| |||||||||   ||||||   |||| ||||||||||||||||||||||||    
T  31099 tctatgatcactttagcttttatgtcataaaacctatatgctttactatttaaggcatacccaatgaatacacattcataggct 31016  T

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Target: scaffold0204 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 522 - 576
Target Start/End: Complemental strand, 16592 - 16539
Alignment:
Q  522 tgtaaatctcagtatcatattttcaaggaacttacgtatattgaatccttaaaca 576  Q
    ||||||||| |||||||||| ||||| ||  ||||||||||||||||||||||||    
T  16592 tgtaaatcttagtatcatatcttcaacgag-ttacgtatattgaatccttaaaca 16539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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