View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16913_low_10 (Length: 277)

Name: NF16913_low_10
Description: NF16913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16913_low_10
NF16913_low_10
[»] chr7 (5 HSPs)
chr7 (6-277)||(27597503-27597774)
chr7 (194-266)||(27597976-27598049)
chr7 (195-265)||(36675185-36675256)
chr7 (193-268)||(28445224-28445299)
chr7 (221-266)||(23578098-23578143)
[»] chr6 (3 HSPs)
chr6 (195-263)||(7301397-7301466)
chr6 (195-266)||(11637815-11637887)
chr6 (195-266)||(7301678-7301750)
[»] chr5 (6 HSPs)
chr5 (195-266)||(13042531-13042603)
chr5 (195-266)||(13112529-13112601)
chr5 (195-266)||(13042988-13043060)
chr5 (195-266)||(13112984-13113056)
chr5 (195-268)||(13042704-13042778)
chr5 (195-268)||(13112702-13112776)
[»] chr2 (3 HSPs)
chr2 (195-266)||(28226329-28226401)
chr2 (195-266)||(13792588-13792660)
chr2 (195-266)||(28226647-28226719)
[»] chr8 (4 HSPs)
chr8 (196-266)||(5981536-5981607)
chr8 (205-266)||(2954319-2954381)
chr8 (224-265)||(3670894-3670935)
chr8 (205-268)||(2954600-2954664)
[»] chr3 (8 HSPs)
chr3 (195-264)||(29795941-29796011)
chr3 (195-265)||(16143430-16143501)
chr3 (200-266)||(43978669-43978736)
chr3 (198-266)||(40195914-40195983)
chr3 (199-266)||(23162181-23162249)
chr3 (195-266)||(48127909-48127981)
chr3 (195-266)||(53595952-53596024)
chr3 (195-266)||(53596267-53596339)
[»] chr4 (8 HSPs)
chr4 (221-266)||(922437-922482)
chr4 (199-266)||(11307673-11307741)
chr4 (195-265)||(34946500-34946570)
chr4 (200-266)||(47680618-47680685)
chr4 (195-268)||(10396123-10396197)
chr4 (224-266)||(11197248-11197290)
chr4 (195-266)||(10396408-10396480)
chr4 (195-262)||(34946209-34946277)
[»] chr1 (4 HSPs)
chr1 (200-269)||(27686615-27686685)
chr1 (198-266)||(4392286-4392355)
chr1 (198-266)||(15327851-15327920)
chr1 (199-266)||(12466279-12466347)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 277
Target Start/End: Original strand, 27597503 - 27597774
Alignment:
Q  6 agatccgactctggctgcatcaatgttagactatggatagtaagtttaagtttaagcgtgcatcattagtgtaaactagttttatgttgatattttcaat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27597503 agatccgactctggctgcatcaatgttagactatggatagtaagtttaagtttaagcgtgcatcattagtgtaaactagttttatgttgatattttcaat 27597602  T
Q  106 aaggatctcttaccttcactactccatatcattgatttcaataatannnnnnngaaaaatatcgttaatttcgagatgcagctactaccgttggaaatta 205  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||       |||||||||||||||||||||||||| | ||||||||||||||||||    
T  27597603 aaggatctcttaccttcaccactccatatcattgatatcaataatatttttttgaaaaatatcgttaatttcgagatgcggttactaccgttggaaatta 27597702  T
Q  206 agtgtgagtgatatatcccacatcgactataaatgaagcaaacgttggatatataagagagaaatccataaa 277  Q
    |||||||||||||||| ||||||||| || ||||| ||||||||||||||||||||||||||||||||||||    
T  27597703 agtgtgagtgatatattccacatcgattagaaatggagcaaacgttggatatataagagagaaatccataaa 27597774  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 27597976 - 27598049
Alignment:
Q  194 cgttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    |||||||||| |||||||||||||| | || ||||||||||||||||  |||||||||||||||||||||||||    
T  27597976 cgttggaaatcaagtgtgagtgataatgtctcacatcgactataaattgagcaaacgttggatatataagagag 27598049  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 36675185 - 36675256
Alignment:
Q  195 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagaga 265  Q
    |||| |||| || ||||||||||| | |||||||||||||||||||| || |||||||||||||||||||||    
T  36675185 gttgaaaatcaaatgtgagtgataatgtcccacatcgactataaatggagaaaacgttggatatataagaga 36675256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 28445299 - 28445224
Alignment:
Q  193 ccgttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagagagaa 268  Q
    ||||||||||| || ||||||||||| | |||||||||||||| || || ||||||  |||||||||||||||||||    
T  28445299 ccgttggaaatcaactgtgagtgataatgtcccacatcgactagaa-tggagcaaatattggatatataagagagaa 28445224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 23578143 - 23578098
Alignment:
Q  221 tcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||||||||| || ||||| || ||||||||||||||||||||||    
T  23578143 tcccacatcgagtagaaatggagaaaacgttggatatataagagag 23578098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 7301466 - 7301397
Alignment:
Q  195 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataaga 263  Q
    |||| |||||||||||||||||| || |||||||||||||| ||||| || |||||||||||||||||||    
T  7301466 gttgaaaattaagtgtgagtgattatgtcccacatcgactagaaatggaggaaacgttggatatataaga 7301397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 11637887 - 11637815
Alignment:
Q  195 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    |||| |||| |||||||||||||| | ||| |||||||||| || |||||||||| ||| |||||||||||||    
T  11637887 gttgaaaatcaagtgtgagtgataatgtccaacatcgactagaagtgaagcaaacattgaatatataagagag 11637815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 7301750 - 7301678
Alignment:
Q  195 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||||||| |||||||||| || || |||||||||||||| ||||| || ||| ||| ||||||||| ||||    
T  7301750 gttggaaatcaagtgtgagtaattatgtcccacatcgactaaaaatggagaaaatgttagatatataaaagag 7301678  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 13042531 - 13042603
Alignment:
Q  195 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||  ||||||| || ||||||||||||||    
T  13042531 gttggaaatcaagtgtgagtgataatatcccacatcgactagaaatagagcaaacattagatatataagagag 13042603  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 13112529 - 13112601
Alignment:
Q  195 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||  ||||||| || ||||||||||||||    
T  13112529 gttggaaatcaagtgtgagtgataatatcccacatcgactagaaatagagcaaacattagatatataagagag 13112601  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 13042988 - 13043060
Alignment:
Q  195 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||||||| ||| |||||||||| | |||||||||||||| ||||  ||||||| |||||||||||||||||    
T  13042988 gttggaaatcaagagtgagtgataatctcccacatcgactagaaatagagcaaacattggatatataagagag 13043060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 13112984 - 13113056
Alignment:
Q  195 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||||||| ||| |||||||||| | |||||||||||||| ||||  ||||||| |||||||||||||||||    
T  13112984 gttggaaatcaagagtgagtgataatctcccacatcgactagaaatagagcaaacattggatatataagagag 13113056  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 13042704 - 13042778
Alignment:
Q  195 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagagaa 268  Q
    ||||||||| ||||||||||||| || | ||||||| |||| ||||| ||||||| || ||||||||||||||||    
T  13042704 gttggaaatcaagtgtgagtgattatgtgccacatcaactagaaatggagcaaacattagatatataagagagaa 13042778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 13112702 - 13112776
Alignment:
Q  195 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagagaa 268  Q
    ||||||||| ||||||||||||| || | ||||||| |||| ||||| ||||||| || ||||||||||||||||    
T  13112702 gttggaaatcaagtgtgagtgattatgtgccacatcaactagaaatggagcaaacattagatatataagagagaa 13112776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 28226329 - 28226401
Alignment:
Q  195 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||||||| ||||||||||| || | |||||||||||||| ||||| || ||||||||||||||||||||||    
T  28226329 gttggaaatcaagtgtgagtgttaatgtcccacatcgactagaaatggaggaaacgttggatatataagagag 28226401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 13792660 - 13792588
Alignment:
Q  195 gttggaaattaagtgtgagtga-tatatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||||||| |||||||||||| ||| ||||||||| |||| ||||| || |||  || ||||||||||||||    
T  13792660 gttggaaatcaagtgtgagtgattatgtcccacatcaactagaaatggaggaaatatttgatatataagagag 13792588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 28226647 - 28226719
Alignment:
Q  195 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||||||| |||||||| ||||| |||| ||||||||| | |||||  |||||  |||||||||||||||||    
T  28226647 gttggaaatcaagtgtgactgataatatcacacatcgacaagaaatggggcaaatattggatatataagagag 28226719  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 5981607 - 5981536
Alignment:
Q  196 ttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    |||||||| ||||||||||||| || ||||||||||||||  |||| || ||||||||||||||||||||||    
T  5981607 ttggaaatcaagtgtgagtgattatgtcccacatcgactaggaatggagaaaacgttggatatataagagag 5981536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 2954381 - 2954319
Alignment:
Q  205 aagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||||||||||| || ||||||||||||||  |||| || ||| ||||||||||||||||||    
T  2954381 aagtgtgagtgattatttcccacatcgactaggaatggagaaaatgttggatatataagagag 2954319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 3670935 - 3670894
Alignment:
Q  224 cacatcgactataaatgaagcaaacgttggatatataagaga 265  Q
    ||||||||||| ||||| || |||||||||||||||||||||    
T  3670935 cacatcgactagaaatggaggaaacgttggatatataagaga 3670894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 2954664 - 2954600
Alignment:
Q  205 aagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagagaa 268  Q
    ||||||||||||| || |||||||| |||||  |||| || ||| ||||||||||||||||||||    
T  2954664 aagtgtgagtgattatgtcccacatagactaggaatggagaaaatgttggatatataagagagaa 2954600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 29795941 - 29796011
Alignment:
Q  195 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagag 264  Q
    ||||||||| |||||| |||||| ||||| ||||||||||| |||| ||| ||||||| ||||||||||||    
T  29795941 gttggaaatcaagtgttagtgattatatctcacatcgactaaaaataaagaaaacgttagatatataagag 29796011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 16143430 - 16143501
Alignment:
Q  195 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagaga 265  Q
    ||||||||| |||||||||||||| | | |||||||  ||| ||||| |||||| |||||||||||||||||    
T  16143430 gttggaaatcaagtgtgagtgataatgttccacatctgctagaaatggagcaaatgttggatatataagaga 16143501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 43978736 - 43978669
Alignment:
Q  200 aaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    |||| ||||||||||||| || ||||||||||||||  |||| || |||| |||||||||||||||||    
T  43978736 aaatcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaacattggatatataagagag 43978669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 40195983 - 40195914
Alignment:
Q  198 ggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    |||||| ||||||||||||| || |  |||||||||||  |||| || ||||||||||||||||||||||    
T  40195983 ggaaatcaagtgtgagtgattatgtttcacatcgactaggaatggaggaaacgttggatatataagagag 40195914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 23162181 - 23162249
Alignment:
Q  199 gaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||| ||||||||||||| || ||||||||||| ||  |||| || |||||||||| |||||||||||    
T  23162181 gaaataaagtgtgagtgattatgtcccacatcgattaggaatggaggaaacgttggacatataagagag 23162249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 48127981 - 48127909
Alignment:
Q  195 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||||||| || |||||||||| || || |||||| ||||||||||  | ||||||| ||||||||||||||    
T  48127981 gttggaaatcaaatgtgagtgattatgtcacacatcaactataaatggtggaaacgtttgatatataagagag 48127909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 53595952 - 53596024
Alignment:
Q  195 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||||||| ||||| ||||||| || |||||||| ||||| ||||  || ||| ||||||||||||||||||    
T  53595952 gttggaaatcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttggatatataagagag 53596024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 53596267 - 53596339
Alignment:
Q  195 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||||||| ||||| ||||||| || |||||||| ||||| ||||  || ||| ||||||||||||||||||    
T  53596267 gttggaaatcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttggatatataagagag 53596339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 922437 - 922482
Alignment:
Q  221 tcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||    
T  922437 tcccacatcgactagaaatgaagcaaacgttagatatagaagagag 922482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 11307741 - 11307673
Alignment:
Q  199 gaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    |||||||||||||||||||  | || ||||||||||||||||| || ||| ||||||||||| ||||||    
T  11307741 gaaattaagtgtgagtgattgtgtctcacatcgactataaatggaggaaatgttggatatatgagagag 11307673  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 34946570 - 34946500
Alignment:
Q  195 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagaga 265  Q
    ||||||||| ||||||| |||||| | || ||||||||||| ||||| |||||||||||||||| |||||||    
T  34946570 gttggaaatcaagtgtg-gtgataatgtctcacatcgactagaaatggagcaaacgttggatatttaagaga 34946500  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 47680618 - 47680685
Alignment:
Q  200 aaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    |||||||||||||||||| || ||||||||||| |||||||| || |||| ||| ||||||| |||||    
T  47680618 aaattaagtgtgagtgattatgtcccacatcgattataaatggaggaaacattgaatatatatgagag 47680685  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 10396123 - 10396197
Alignment:
Q  195 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagagaa 268  Q
    ||||||||| ||||||||||||| || || ||||||||| | ||||| || ||| |||| |||||||||||||||    
T  10396123 gttggaaatcaagtgtgagtgattatgtctcacatcgacaagaaatggaggaaatgttgaatatataagagagaa 10396197  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 11197248 - 11197290
Alignment:
Q  224 cacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||||||||| ||||| || ||||||||||||||||||||||    
T  11197248 cacatcgactagaaatggaggaaacgttggatatataagagag 11197290  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 10396408 - 10396480
Alignment:
Q  195 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||||||| ||||||||||||| || || || || ||||| ||||| || ||| ||||||||||||||||||    
T  10396408 gttggaaatcaagtgtgagtgattatgtctcatattgactagaaatggaggaaatgttggatatataagagag 10396480  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 34946277 - 34946209
Alignment:
Q  195 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataag 262  Q
    ||||||||| ||||||||||||| || ||||||||| |||  ||||| ||||||||||| |||| ||||    
T  34946277 gttggaaatcaagtgtgagtgataatgtcccacatcaacttgaaatggagcaaacgttgaatatttaag 34946209  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 269
Target Start/End: Complemental strand, 27686685 - 27686615
Alignment:
Q  200 aaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagagaaa 269  Q
    |||||||||||||||||| || | ||||||||||||  |||| || |||| || |||||||||||||||||    
T  27686685 aaattaagtgtgagtgattatgttccacatcgactaggaatggaggaaacattagatatataagagagaaa 27686615  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 4392355 - 4392286
Alignment:
Q  198 ggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    |||||| ||||||||||||| || || |||||||||||| |||| || |||| |||||||||||| ||||    
T  4392355 ggaaatcaagtgtgagtgattatgtctcacatcgactatgaatggaggaaacattggatatataacagag 4392286  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 15327851 - 15327920
Alignment:
Q  198 ggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    |||||| ||||||||||||| || || |||||||||||  |||| || ||||||| ||||||||||||||    
T  15327851 ggaaatcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttagatatataagagag 15327920  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 12466279 - 12466347
Alignment:
Q  199 gaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 266  Q
    ||||| |||||| |||||| || ||||||||| |||| ||||| || |||||||||||||||| |||||    
T  12466279 gaaatcaagtgtaagtgattatgtcccacatcaactagaaatggagaaaacgttggatatatacgagag 12466347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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