View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16913_low_11 (Length: 275)
Name: NF16913_low_11
Description: NF16913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16913_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 31346837 - 31347086
Alignment:
| Q |
10 |
catcatcagaatatctcccaaaagaaaactcttggtttatgctttggtttgaggttgttccaatattctcattctccaactgcatcctcaacatcgattg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31346837 |
catcatcagaatatctcccaaaagaaaactcttggtttatgctttggtttgaggttgttccaatattctcattctccaactgcatcctcaacagcgattg |
31346936 |
T |
|
| Q |
110 |
gtcttgagagaagaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaaggataaacatccatttgcttt |
209 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31346937 |
gtcttgagagaagaaaaagtttgacgaatttccgaccattgaggtttggttcaaatcagcagctattacttcagctaaaggataaacatccatttgtttt |
31347036 |
T |
|
| Q |
210 |
gaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgtt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31347037 |
gaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgtt |
31347086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 57 - 259
Target Start/End: Original strand, 31357544 - 31357746
Alignment:
| Q |
57 |
tttgaggttgttccaatattctcattctccaactgcatcctcaacatcgattggtcttgagagaagaaaaagtttgatgaatttccgaccattgtagttt |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
31357544 |
tttgaggttgttccaatattctcattctccaactgcatcctcaacagcaattgttcttgagagaagaaaaagtttgacgaattcccgaccattgaggttt |
31357643 |
T |
|
| Q |
157 |
ggttcaaatcggcagctattacttcagctaaaggataaacatccatttgctttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaat |
256 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31357644 |
ggttcaaatcagcagctattacttcagctaaaggataaacatccaattgttttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaat |
31357743 |
T |
|
| Q |
257 |
gtt |
259 |
Q |
| |
|
||| |
|
|
| T |
31357744 |
gtt |
31357746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 121 - 259
Target Start/End: Complemental strand, 2920430 - 2920289
Alignment:
| Q |
121 |
agaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaagg---ataaacatccatttgctttgaagagga |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| |||| ||| || || ||||||| ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
2920430 |
agaaaaagtttgatgaattcccgaccattgaggtttggttggaatcagcaactgttccttcagcgaaagggttataaacatccatttgttttgaagagga |
2920331 |
T |
|
| Q |
218 |
tgaaatgttcaagatactagtttcattgttatgaacaatgtt |
259 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2920330 |
tgaaatgttcaagatacaagtttcattgttatgaacaatgtt |
2920289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 111 - 259
Target Start/End: Complemental strand, 2925822 - 2925674
Alignment:
| Q |
111 |
tcttgagagaagaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaaggataaacatccatttgctttg |
210 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||| |||||| ||| |||| ||| || || || || |||||||||| |||||||||||||| |||| |
|
|
| T |
2925822 |
tcttgggagaagaaaaagtttgaagaattcccggccattgaggttaggttgggatcagccactgttgctccagctaaagggtaaacatccatttgttttg |
2925723 |
T |
|
| Q |
211 |
aagaggatgaaatgttcaagatactagtttcattgttatgaacaatgtt |
259 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2925722 |
aagacgatgaaatgttcaagatacttgtttcattgttatgaacaatgtt |
2925674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 259
Target Start/End: Complemental strand, 29272460 - 29272326
Alignment:
| Q |
128 |
gtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaagg---ataaacatccatttgctttgaagaggatgaaatg |
224 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| |||| ||| | || ||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
29272460 |
gtttgatgaattcccgaccattgaggtttggttggaatcagcaattgttgcttcagctaaagggttataaacatccatttgttttgaagaggatgaaatg |
29272361 |
T |
|
| Q |
225 |
ttcaagatactagtttcattgttatgaacaatgtt |
259 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29272360 |
ttcaagatactagtttcattgttgtgaacaatgtt |
29272326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 122 - 259
Target Start/End: Complemental strand, 9447837 - 9447693
Alignment:
| Q |
122 |
gaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaagg---ataaacatccatttgctttgaagaggat |
218 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |||||||| ||| ||| | || ||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
9447837 |
gaaaaagtttgatgaattcccgacaattgaggtttggttggaataagcaattgttgcttcagctaaagggttataaacatccatttgttttgaagaggat |
9447738 |
T |
|
| Q |
219 |
gaaatgttcaag----atactagtttcattgttatgaacaatgtt |
259 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9447737 |
gaaatgttcaagatatatactagtttcattgttatgaacaatgtt |
9447693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University