View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16913_low_12 (Length: 274)
Name: NF16913_low_12
Description: NF16913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16913_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 4243853 - 4243604
Alignment:
| Q |
9 |
gagcagaacctgtgcataaagtcaaacaacaatgtagtaaagttgttagcaagaggcagcagctcacttaacacaacatgtaagccaatattcttccaac |
108 |
Q |
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| T |
4243853 |
gagcataatctgtgcataaagtcaaacaacaatgtagtaaagttgttagcaagaggcagcagctcacttaacacaacatgtaagccaatattcttccaac |
4243754 |
T |
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| Q |
109 |
aatccatggcttttgcgcaaacaaagaagagatgagtgtggcattccgcaaaattttcacacataacacatgattcctcgcactgaattcctcttgcatt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
4243753 |
aatccatggcttttgcgcaaacaaagaagagatgagtgtggcattccgcaaaattttcaaacataacacatgattcctcgcactggattcctcttgcatt |
4243654 |
T |
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| Q |
209 |
aagattgacacgagtgggcaagcaatgatgagctaaacgccatagaaagg |
258 |
Q |
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| T |
4243653 |
aagattgacacgagtgggcaagcaattatgagctaaacgccatagaaagg |
4243604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 33495732 - 33495964
Alignment:
| Q |
18 |
ctgtgcataaagtcaaacaacaatgtagtaaagttgttagcaagaggcagcagctcacttaacacaacatgtaagccaatattcttccaacaatccatgg |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
33495732 |
ctgtgcgtaaagtcaaacaacaatgtagtaaagttgttagcaagagggagaagctcacttaacacatcatataagccaatattcttccaacaatccatgg |
33495831 |
T |
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| Q |
118 |
cttttgcgcaaacaaagaagagatgagtgtggcattccgcaaaattttcacacataacacatgattcctcgcactgaattcctcttgcattaagattgac |
217 |
Q |
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||||||| |||||||||||||||| | ||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33495832 |
cttttgcacaaacaaagaagagattaatgtgggattccgcaaaagtttcacacataacgcatgattcctcgcactgaattcctcttacattaagattgac |
33495931 |
T |
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| Q |
218 |
acgagtgggcaagcaatgatgagctaaacgcca |
250 |
Q |
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| T |
33495932 |
acgggtgggcaagaaatgatgagctaaatgcca |
33495964 |
T |
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