View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16913_low_14 (Length: 254)

Name: NF16913_low_14
Description: NF16913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16913_low_14
NF16913_low_14
[»] chr4 (3 HSPs)
chr4 (15-102)||(18342897-18342984)
chr4 (99-162)||(18342792-18342855)
chr4 (99-162)||(48288736-48288799)
[»] chr2 (2 HSPs)
chr2 (15-102)||(36840670-36840757)
chr2 (99-162)||(36840565-36840628)
[»] scaffold0002 (2 HSPs)
scaffold0002 (15-102)||(164380-164467)
scaffold0002 (99-162)||(164509-164572)
[»] chr6 (2 HSPs)
chr6 (15-102)||(14249259-14249346)
chr6 (99-162)||(14249154-14249217)
[»] chr3 (1 HSPs)
chr3 (15-102)||(46699147-46699234)
[»] scaffold1779 (1 HSPs)
scaffold1779 (15-87)||(733-805)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 18342984 - 18342897
Alignment:
Q  15 cataggagctagtaatcgacggtatgtttatattggtgacattgttgttgatgtaatcaaaaaaggagtaccagattcatctttagaa 102  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||    
T  18342984 cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaa 18342897  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 18342855 - 18342792
Alignment:
Q  99 agaactaaaacgtagtaatggtataataataaagtatgatgataatgtggcggttctcattgat 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18342855 agaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgat 18342792  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 48288799 - 48288736
Alignment:
Q  99 agaactaaaacgtagtaatggtataataataaagtatgatgataatgtggcggttctcattgat 162  Q
    ||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||    
T  48288799 agaactaaaacgtggtgatgatataataataaagtatgatgataatgcggcggttctcattgat 48288736  T

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Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 36840757 - 36840670
Alignment:
Q  15 cataggagctagtaatcgacggtatgtttatattggtgacattgttgttgatgtaatcaaaaaaggagtaccagattcatctttagaa 102  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||    
T  36840757 cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaa 36840670  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 36840628 - 36840565
Alignment:
Q  99 agaactaaaacgtagtaatggtataataataaagtatgatgataatgtggcggttctcattgat 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36840628 agaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgat 36840565  T

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Target: scaffold0002 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 164380 - 164467
Alignment:
Q  15 cataggagctagtaatcgacggtatgtttatattggtgacattgttgttgatgtaatcaaaaaaggagtaccagattcatctttagaa 102  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||    
T  164380 cataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaa 164467  T

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Target: scaffold0002; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 164509 - 164572
Alignment:
Q  99 agaactaaaacgtagtaatggtataataataaagtatgatgataatgtggcggttctcattgat 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  164509 agaactaaaacgtagtaatggtataataataaagtatgatgataatgcggtggttctcattgat 164572  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 14249346 - 14249259
Alignment:
Q  15 cataggagctagtaatcgacggtatgtttatattggtgacattgttgttgatgtaatcaaaaaaggagtaccagattcatctttagaa 102  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||    
T  14249346 cataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaa 14249259  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 14249217 - 14249154
Alignment:
Q  99 agaactaaaacgtagtaatggtataataataaagtatgatgataatgtggcggttctcattgat 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  14249217 agaactaaaacgtagtaatggtataataataaagtatgatgataatgcggtggttctcattgat 14249154  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 46699234 - 46699147
Alignment:
Q  15 cataggagctagtaatcgacggtatgtttatattggtgacattgttgttgatgtaatcaaaaaaggagtaccagattcatctttagaa 102  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||| ||||||||||||||    
T  46699234 cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaataaaaaaagcagtaccaaattcatctttagaa 46699147  T

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Target: scaffold1779 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 733 - 805
Alignment:
Q  15 cataggagctagtaatcgacggtatgtttatattggtgacattgttgttgatgtaatcaaaaaaggagtacca 87  Q
    |||||||||||||||||| || |||| | ||||||||||| || |||||| ||| |||||  ||| |||||||    
T  733 cataggagctagtaatcgccgatatgctcatattggtgacgttattgttgctgtgatcaaggaagcagtacca 805  T

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