View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16913_low_17 (Length: 236)
Name: NF16913_low_17
Description: NF16913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16913_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41705021 - 41705241
Alignment:
| Q |
1 |
aaatttaatttcacattaaggatatttttgtcgttttagggtgtaaccaagtttgaaagtggtgttactatcaaataatattttcatagttgtttctgac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41705021 |
aaatttaatttcacattaaggatatttttgttgttttagggtgtaaccaagtttgaaagtggtgttactatcaaataatattttcatagttgtttttgac |
41705120 |
T |
|
| Q |
101 |
atagaatcaatgaaatcagatgagttttggaggcaaaaagactaagatttggattgcaaatatgcacaacagtatgtacggccttatatagcaccctgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41705121 |
atagaatcaatgaaatcagatgagttttggaggcaaaaagactaagatttggattgcaaatatgcacaacagtatgtacggccttatatagcaccctgaa |
41705220 |
T |
|
| Q |
201 |
ataaacatttggggatgaaaa |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
41705221 |
ataaacatttggggatgaaaa |
41705241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University