View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16913_low_2 (Length: 572)

Name: NF16913_low_2
Description: NF16913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16913_low_2
NF16913_low_2
[»] chr4 (5 HSPs)
chr4 (188-551)||(43043165-43043540)
chr4 (367-465)||(44983376-44983475)
chr4 (70-132)||(43043100-43043162)
chr4 (132-179)||(47964166-47964213)
chr4 (393-431)||(47528891-47528929)
[»] chr6 (1 HSPs)
chr6 (487-548)||(442908-442969)
[»] chr8 (3 HSPs)
chr8 (126-183)||(23739448-23739505)
chr8 (48-125)||(11729280-11729356)
chr8 (48-125)||(23739592-23739668)
[»] chr7 (1 HSPs)
chr7 (487-527)||(29266323-29266363)
[»] chr5 (2 HSPs)
chr5 (487-521)||(21269094-21269128)
chr5 (487-520)||(21271109-21271142)
[»] chr3 (3 HSPs)
chr3 (487-517)||(25435166-25435196)
chr3 (487-517)||(50828501-50828531)
chr3 (487-517)||(50847322-50847352)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 188 - 551
Target Start/End: Original strand, 43043165 - 43043540
Alignment:
Q  188 gaatcacacacaaaacaatagttgtaacaaataaaaggtnnnnnnnnnn--ctcaaatatagatgatagaagcagaagaggcactggtctgctttcataa 285  Q
    ||||||||||||||||||||||||||||||||||||| |            |||||||||||||||||| |||||||||| |||||||||| ||||||||    
T  43043165 gaatcacacacaaaacaatagttgtaacaaataaaagctaaaaaaaaaaaactcaaatatagatgatagcagcagaagagacactggtctgttttcataa 43043264  T
Q  286 ccgcaaccaccacttgaattcttcaacctgcaatcaaacatacttcattaccattccaacagtgatgggtgaaaccccactatttgacatccttattatc 385  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  43043265 ccgcaaccaccacctgaattcttcaacttgcaatcaaacatacttcgttaccattccgacactgatgggtgaaaccccactatttgacatccttattatc 43043364  T
Q  386 ttcaacctcaagagaactcaaatacttaaatatctatcaaataaagagtc-gaaatcaattcaaatttagaaggaatgaaatttaggacatgtaaccagg 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43043365 ttcaacctcaagagaactcaaatacttaaatatctatcaaataaagagtcggaaatcaattcaaatttagaaggaatgaaatttaggacatgtaaccggg 43043464  T
Q  485 cgtattggc---------agccaaagaacacatgacattcatatttttcctacttgtcacatattggacatgtaac 551  Q
    |||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43043465 cgtattggcagccaaagaagccaaagaacacatgacattcatatttttcctacttgtcacatattggacatgtaac 43043540  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 367 - 465
Target Start/End: Original strand, 44983376 - 44983475
Alignment:
Q  367 atttgacatccttattatcttcaacctcaagagaactcaaatacttaaatatctatcaaataaagagtc-gaaatcaattcaaatttagaaggaatgaaa 465  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | || ||||||||||||||||    
T  44983376 atttgacatccttattatcttcgacctcaagagaactcaaatacttgaatatctatcaaataaagagtcggaaatcaactaaagtttagaaggaatgaaa 44983475  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 43043100 - 43043162
Alignment:
Q  70 acacatatcttctattagtttctttcctatggactacataattcgaagttatttaattcctca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43043100 acacatatcttctattagtttctttcctatggactacataattcgaagttattcaattcctca 43043162  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 47964166 - 47964213
Alignment:
Q  132 aatgattcagttactctcaatttcacagcaaatcatctaataccataa 179  Q
    ||||||||||||||||||||||||||| |||| ||| |||||||||||    
T  47964166 aatgattcagttactctcaatttcacaacaaaccatttaataccataa 47964213  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 431
Target Start/End: Complemental strand, 47528929 - 47528891
Alignment:
Q  393 tcaagagaactcaaatacttaaatatctatcaaataaag 431  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  47528929 tcaagagaactcaaatacttgaatatctatcaaataaag 47528891  T

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Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 487 - 548
Target Start/End: Complemental strand, 442969 - 442908
Alignment:
Q  487 tattggcagccaaagaacacatgacattcatatttttcctacttgtcacatattggacatgt 548  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  442969 tattggcagccaaagaacagatgacattcatatttttcctacttgtcacacattggacatgt 442908  T

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Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 23739505 - 23739448
Alignment:
Q  126 ttcctcaatgattcagttactctcaatttcacagcaaatcatctaataccataaaaga 183  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  23739505 ttcctcaatgattcagtcactttcaatttcacaacaaatcatctaataccataaaaga 23739448  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 11729356 - 11729280
Alignment:
Q  48 gagaaacagattagagaggaacacacatatcttctattagtttctttcctatggactacataattcgaagttatttaa 125  Q
    |||||| ||| ||||||| |||| ||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||    
T  11729356 gagaaatagaatagagag-aacatacataccttctattagtttctttcctttggaccacataatttgaagtaatttaa 11729280  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 23739668 - 23739592
Alignment:
Q  48 gagaaacagattagagaggaacacacatatcttctattagtttctttcctatggactacataattcgaagttatttaa 125  Q
    |||||| ||| ||||||| |||| ||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||    
T  23739668 gagaaatagaatagagag-aacatacataccttctattagtttctttcctttggaccacataatttgaagtaatttaa 23739592  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 487 - 527
Target Start/End: Original strand, 29266323 - 29266363
Alignment:
Q  487 tattggcagccaaagaacacatgacattcatatttttccta 527  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  29266323 tattggcagccaaagaacaaatgacattcatatttttccta 29266363  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 521
Target Start/End: Complemental strand, 21269128 - 21269094
Alignment:
Q  487 tattggcagccaaagaacacatgacattcatattt 521  Q
    ||||||||||||||||||| |||||||||||||||    
T  21269128 tattggcagccaaagaacagatgacattcatattt 21269094  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 520
Target Start/End: Complemental strand, 21271142 - 21271109
Alignment:
Q  487 tattggcagccaaagaacacatgacattcatatt 520  Q
    ||||||||||||||||||| ||||||||||||||    
T  21271142 tattggcagccaaagaacagatgacattcatatt 21271109  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 517
Target Start/End: Complemental strand, 25435196 - 25435166
Alignment:
Q  487 tattggcagccaaagaacacatgacattcat 517  Q
    |||||||||||||||||||||||||||||||    
T  25435196 tattggcagccaaagaacacatgacattcat 25435166  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 517
Target Start/End: Original strand, 50828501 - 50828531
Alignment:
Q  487 tattggcagccaaagaacacatgacattcat 517  Q
    |||||||||||||||||||||||||||||||    
T  50828501 tattggcagccaaagaacacatgacattcat 50828531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 517
Target Start/End: Complemental strand, 50847352 - 50847322
Alignment:
Q  487 tattggcagccaaagaacacatgacattcat 517  Q
    |||||||||||||||||||||||||||||||    
T  50847352 tattggcagccaaagaacacatgacattcat 50847322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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