View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16913_low_3 (Length: 475)
Name: NF16913_low_3
Description: NF16913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16913_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 459
Target Start/End: Original strand, 2759246 - 2759681
Alignment:
| Q |
11 |
caaaggaaggattagtatgagtggctgcagaaacacaatagaagttatcattgagctttcttgtagaaaaacaaacatgaatgatgtttcctgttataat |
110 |
Q |
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| T |
2759246 |
caaaggaaggattagtatgagtggctgcagaaacacaatagaagttatcattgagctttcttgtagaaaaacaaacatgaatgatgtttcctgttataat |
2759345 |
T |
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| Q |
111 |
tgtggagaaagaagaccacatgtatataaggattaaaagaaagattaaagcagaaattctacgtatgaagctgtatagaattgtgaaggcaaaacaagat |
210 |
Q |
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| T |
2759346 |
tgtggagaaagaagaccaaatgtatataaggattaaaagaaagattaaagcagaaattctacgtatgaagctgtatagaattgtgaaggcaaaacaagat |
2759445 |
T |
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| Q |
211 |
tgtttgggttctaattttcttgaaaatttggaccgttttttggataaagacactgccatttttgtgatgagaataatgttaggaattaggataccttgtg |
310 |
Q |
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| T |
2759446 |
tgtttgggttctaattttcttgaaaatttggaccgttttttggataaagacactgccattattgtgatgagaataatgttaggaattaggataccttgtg |
2759545 |
T |
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| Q |
311 |
gtttttctagtagagaaaaaattatgcattattttatcaccaatacttatcatgcaagcacgaattagatgattaaataataacgtgtgcacgtcgtggt |
410 |
Q |
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| T |
2759546 |
gtttttctagtagagaaaaaattatgcattattttgtcaccaatacttatcatgcaagcacgaattagatgattaaataataacgtgtgcacgtcgtg-- |
2759643 |
T |
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| Q |
411 |
ttagatatatagtttatcgtacgaacgtgcttactaatatagtggttga |
459 |
Q |
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| T |
2759644 |
-----------gtttatcgtacgaacgtgcttactaatatagtggttga |
2759681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 2755285 - 2755446
Alignment:
| Q |
11 |
caaaggaaggattagtatgagtggctgcagaaacacaatagaagttatcattgagctttcttgtagaaaaacaaacatgaatgatgtttcctgttataat |
110 |
Q |
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||||||||| |||||||||||||| || ||||| |||||| ||| ||| | ||| ||||||||||||| |||||||||||||| |||| |||||||||| |
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| T |
2755285 |
caaaggaagtattagtatgagtgggtgaagaaagacaataaaagctattactgaactttcttgtagaacaacaaacatgaatggtgttgactgttataat |
2755384 |
T |
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| Q |
111 |
tgtggagaaagaagaccacatgtatataaggattaaaagaaagattaaagcagaaattctac |
172 |
Q |
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| T |
2755385 |
agtggataaagaagaccacatgtagattaggaataaaagaaagattaaagccgaaattctac |
2755446 |
T |
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