View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16913_low_4 (Length: 455)
Name: NF16913_low_4
Description: NF16913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16913_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 14 - 445
Target Start/End: Original strand, 49385496 - 49385927
Alignment:
| Q |
14 |
cattctcaccttctgcagcctcattattcaatccatattttctttgccattttctcagccatgtcaacctctaaaaagatcacatcagattcatctttca |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49385496 |
cattcttaccttctgcagcctcattattcaatccatattttctttgccattttctcagccatgtcaacctctaaaaagatcacatcagattcatctttca |
49385595 |
T |
|
| Q |
114 |
aaggatatcatgaaacaaatcaaacacaaatgtgtctgtctctacttcaaagaaacacaaacacatcacctagtggtgaaaaaagaggaagaaggaaaca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49385596 |
aaggatatcatgaaacaaatcaaacacaaatgtgtctgtctctacttcaaagaaacacaaacacatcacctagtggtgaaaaaagaggaagaaggaaaca |
49385695 |
T |
|
| Q |
214 |
atcagaaccaggaaggtttcttggtgttaggagaagaccttggggtagatatgctgctgaaattagagaccctacaactaaagaaagacattggcttggt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49385696 |
atcagaaccaggaaggtttcttggtgttaggagaagaccttggggtagatatgctgctgaaattagagaccctacaactaaagaaagacattggcttggt |
49385795 |
T |
|
| Q |
314 |
acttttgatactgctcaagaagctgctcttgcttatgatagagctgctatttccatgaaaggaaatcaagctagaactaatttcatttactctgatacta |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49385796 |
acttttgatactgctcaagaagctgctcttgcttatgatagagctgctatttccatgaaaggaaatcaagctagaactaatttcatttactctgatacta |
49385895 |
T |
|
| Q |
414 |
tcaattttcacacacttgtttcttctcctatg |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
49385896 |
tcaattttcacacacttgtttcttctcctatg |
49385927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 186 - 375
Target Start/End: Complemental strand, 6507830 - 6507641
Alignment:
| Q |
186 |
gtggtgaaaaaagaggaagaaggaaacaatcagaaccaggaaggtttcttggtgttaggagaagaccttggggtagatatgctgctgaaattagagaccc |
285 |
Q |
| |
|
|||| ||||||||||| |||| || ||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6507830 |
gtggcgaaaaaagaggcagaaaaaagcaagcagaaccaggtaagtttcttggtgtaaggagaagaccttggggtagatatgctgctgaaattagagatcc |
6507731 |
T |
|
| Q |
286 |
tacaactaaagaaagacattggcttggtacttttgatactgctcaagaagctgctcttgcttatgatagagctgctatttccatgaaagg |
375 |
Q |
| |
|
| |||||||||||||||||||| | || || |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| |
|
|
| T |
6507730 |
tgcaactaaagaaagacattggttaggaacatttgatactgctcaagaagctgcttttgcttatgatagagctgctctttccatcaaagg |
6507641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 361
Target Start/End: Complemental strand, 4420202 - 4420145
Alignment:
| Q |
304 |
ttggcttggtacttttgatactgctcaagaagctgctcttgcttatgatagagctgct |
361 |
Q |
| |
|
|||||||||||| |||||||| ||| || |||||||| | |||||||||| ||||||| |
|
|
| T |
4420202 |
ttggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgct |
4420145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 25986002 - 25986059
Alignment:
| Q |
304 |
ttggcttggtacttttgatactgctcaagaagctgctcttgcttatgatagagctgct |
361 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
25986002 |
ttggcttggtacttttgacactgctgaagaagctgctttggcttatgatagagctgct |
25986059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 40001351 - 40001303
Alignment:
| Q |
41 |
tcaatccatattttctttgccattttctcagccatgtcaacctctaaaa |
89 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
40001351 |
tcaatccatattttctttgccattttcttagccatgtcaacttctaaaa |
40001303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 339
Target Start/End: Complemental strand, 43848378 - 43848271
Alignment:
| Q |
232 |
tcttggtgttaggagaagaccttggggtagatatgctgctgaaattagagaccctacaactaaagaaagacattggcttggtacttttgatactgctcaa |
331 |
Q |
| |
|
|||||||||||| | |||||| ||||| |||||||| ||||||||||| ||||| || ||||| ||||||||| | || || ||||| ||||| || |
|
|
| T |
43848378 |
tcttggtgttagaaaaagaccatggggaagatatgcagctgaaattaggaacccttataccaaagagagacattggttaggcacatttgacactgcagaa |
43848279 |
T |
|
| Q |
332 |
gaagctgc |
339 |
Q |
| |
|
|||||||| |
|
|
| T |
43848278 |
gaagctgc |
43848271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 33469977 - 33470033
Alignment:
| Q |
305 |
tggcttggtacttttgatactgctcaagaagctgctcttgcttatgatagagctgct |
361 |
Q |
| |
|
||||||||||||||||| || ||| ||||||| ||| | |||||||||| ||||||| |
|
|
| T |
33469977 |
tggcttggtacttttgacacagctgaagaagcagctttggcttatgataaagctgct |
33470033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University