View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16914_high_3 (Length: 290)
Name: NF16914_high_3
Description: NF16914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16914_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 863517 - 863794
Alignment:
| Q |
1 |
tttgcataaggttgatcttcttgatcttcaatctatccaatctgttgtccatggttgccatggtgtgttccacacagcctcccccgtcaccgacaaccct |
100 |
Q |
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| T |
863517 |
tttgcataaggttgatcttcttgatcttcaatctatccaatctgttgttcatggttgccatggtgtgttccacacagcctctcctgtcactgacaaccct |
863616 |
T |
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| Q |
101 |
gtgagttattttcattgttttccattcgaaaatataa---catttataaagagcaac--ttataaggtaaattaatcattttatggaacatataatagga |
195 |
Q |
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| T |
863617 |
gtaaggaattttctttgttttccatttgtaaatttaatttcacatagaaaatgtaacagttataaggtgaattaatcattttatggaacatataatagga |
863716 |
T |
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| Q |
196 |
tgagatgttggagccagcagtgaatggaacaaagaatgtgattatagcgtctgcggaagcaaaagtgcgacgtgttgt |
273 |
Q |
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| T |
863717 |
tgagatgttagagccagcagtgaatggaactaagaatgtgattatagcgtccgcggaagctaaagtgcgacgtgttgt |
863794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 853981 - 854049
Alignment:
| Q |
38 |
caatctgttgtccatggttgccatggtgtgttccacacagcctcccccgtcaccgacaaccctgtgagt |
106 |
Q |
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| T |
853981 |
caatctgtagttcatgcttgtcatggtgtactccacacagcctatcctgtcaccgacaaccctgtgagt |
854049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 45242914 - 45242972
Alignment:
| Q |
204 |
tggagccagcagtgaatggaacaaagaatgtgattatagcgtctgcggaagcaaaagtg |
262 |
Q |
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| T |
45242914 |
tggagccagcagtgaatggagcaaagaatgtgatcatagctggtgcagaagcaaaagtg |
45242972 |
T |
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