View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16914_low_1 (Length: 563)
Name: NF16914_low_1
Description: NF16914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16914_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 25 - 471
Target Start/End: Original strand, 22958674 - 22959120
Alignment:
| Q |
25 |
aagcataggagctgaaacattcacataatgaattccatgagccaccttataatcaaccttgtcacactccttccctgaaccatcatcatatcttttataa |
124 |
Q |
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| T |
22958674 |
aagcataggagctgaaacatgcacataatgaattccatgagccaccttataatcaaccttgtcacactccttccctgaaccatcatcatatcttttataa |
22958773 |
T |
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| Q |
125 |
ccggaccgggtcaatccccgatccaaaccctcaatacgatccataaaatacacaactggtttcacacacgaatcttgactaacgggtcgggtattaaaag |
224 |
Q |
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| T |
22958774 |
ccggaccgggtcaatccccgatctaaaccctcaatccgatccataaaatacacaaccggtttcacacacgaatcttgactaacgggtcgggtattaaaag |
22958873 |
T |
|
| Q |
225 |
taaacggggcatcactccaagtcctccacgttttaaatgtttgggaaaccatttcaagatatttagctgttggtaaatagggatataattcaacactata |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22958874 |
taaacggggcatcactccaagtcctccacgttttaaatgtttgggaaaccatttcaagatatttagctgttggtaaatagggatataattcaacactata |
22958973 |
T |
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| Q |
325 |
gccccacgatattgatattgaccaattttttgtatggtcatagcaaaaagattgttggatagttcgacccggatccgatttgtatgcggtaactaacttt |
424 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22958974 |
gccccatgatattgatattgaccaattttttgtatggtcatagcaaaaggattgttggatagttcgacccggatccgatttgtatgcggtaactaacttt |
22959073 |
T |
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| Q |
425 |
tttactgactcaacccgttccatgtttggaaaaattgggtccacata |
471 |
Q |
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| T |
22959074 |
tttactgactcaacccgttccatgtttggaaaaattgggtccacata |
22959120 |
T |
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