View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16914_low_2 (Length: 457)
Name: NF16914_low_2
Description: NF16914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16914_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 12 - 437
Target Start/End: Complemental strand, 55711374 - 55710949
Alignment:
| Q |
12 |
agaaatagctaccaatctgatctttcacctgaagagtataagtgaagttcttcctgggcgtgatcagacagtttgtgccagagactccagcctgtcatta |
111 |
Q |
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| T |
55711374 |
agaaatagctaccaatctgatctttcacctgaagagtataagtgaagttcttcctgggcgtgatcagacagtttgtgccagagactccagcctgtcatta |
55711275 |
T |
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| Q |
112 |
attactccagtgatgtatgccattcctacataatatgttgagaccataaaattccaacaaactactacaattatttccttcagctaaatcaataatctag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55711274 |
attactccagtgatgtatgccattcctacataatatgttgagaccataaaattccaacaaactactacaattatttccttcagctaaatcaataatctag |
55711175 |
T |
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| Q |
212 |
accattcacttaaggctt-----ctaaatctaaatcattaacaaacaaacttctccttttcactctgttacaaaagggacatgatcaaatgttacatatc |
306 |
Q |
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||||||| |||||||||| |||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
55711174 |
accattcgcttaaggcttctaatctaaatctaaatcatt----aacaaacttctccttttgactttgttacaaaagggacatgatcaaatgttacatatc |
55711079 |
T |
|
| Q |
307 |
aaatcaaattaaattaacataacattcaaattggggaattaaaactctgtttgtcaaacaatacatcagtctatgttgagctgattnnnnnnnnnncttt |
406 |
Q |
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| T |
55711078 |
aaatcaaattaaattaacataacattcaaattgggaaactaaaactctgtttgttaaacaatacatcaatctatgttgtgctgatt-aaaaaaaaacttt |
55710980 |
T |
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| Q |
407 |
cgccagctcatataggatttatggagtgtat |
437 |
Q |
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| T |
55710979 |
caccagctcatataggatttaaggagtgtat |
55710949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 12 - 354
Target Start/End: Complemental strand, 55295452 - 55295115
Alignment:
| Q |
12 |
agaaatagctaccaatctgatctttcacctgaagagtataagtgaagttcttcctgggcgtgatcagacagtttgtgccagagactccagcctgtcatta |
111 |
Q |
| |
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|||| ||| |||| ||||| || |||||||| ||||| |||||||||||||||| |||| |||| |||||||||||||||| |||||| |||| ||| | |
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| T |
55295452 |
agaagtaggtaccgatctggtccttcacctggagagtgtaagtgaagttcttcccaggcgggatcggacagtttgtgccagaaactccatcctgccatga |
55295353 |
T |
|
| Q |
112 |
attactccagtgatgtatgccattcctacataa--tatgtt-gagaccataaaattccaacaaactactacaattatttccttcagctaaatcaataatc |
208 |
Q |
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| T |
55295352 |
gttcctcctgtgctgtatgccattcctgcagaagatatgtttgaaaccataaaattccaacaaactaaaacaatt---tacttatgctaaatgaataaac |
55295256 |
T |
|
| Q |
209 |
tagaccattcacttaaggcttctaaatctaaatcattaacaaacaaacttctccttttcactctgttacaaaagggacatgatcaaatgttacatatcaa |
308 |
Q |
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|||||||||||||||||| || |||||||||| ||||||||||| ||||| || |||| |||||||||||||||||||||||||| ||||||| || |
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| T |
55295255 |
tagaccattcacttaaggattgtaaatctaaagcattaacaaac----ttctctttggcactttgttacaaaagggacatgatcaaatgatacatataaa |
55295160 |
T |
|
| Q |
309 |
atcaaattaaattaacataacattcaaattggggaattaaaactct |
354 |
Q |
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||||||||| | ||| | | |||| ||||| || |||||||||||| |
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| T |
55295159 |
atcaaattaca-taaaaaagcattgaaattaggaaattaaaactct |
55295115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 17346390 - 17346340
Alignment:
| Q |
12 |
agaaatagctaccaatctgatctttcacctgaagagtataagtgaagttct |
62 |
Q |
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||||||||||||||||||||||||| || |||||| ||||||||||||||| |
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| T |
17346390 |
agaaatagctaccaatctgatcttttacttgaagaatataagtgaagttct |
17346340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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