View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16914_low_3 (Length: 387)

Name: NF16914_low_3
Description: NF16914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16914_low_3
NF16914_low_3
[»] chr5 (5 HSPs)
chr5 (18-379)||(15474229-15474590)
chr5 (18-123)||(15466086-15466192)
chr5 (233-346)||(20269469-20269583)
chr5 (234-341)||(22398073-22398181)
chr5 (286-343)||(28351025-28351082)
[»] chr4 (2 HSPs)
chr4 (210-343)||(38562130-38562264)
chr4 (286-334)||(38562137-38562185)
[»] chr1 (6 HSPs)
chr1 (286-350)||(1609959-1610023)
chr1 (286-351)||(24419614-24419679)
chr1 (316-350)||(20814858-20814892)
chr1 (286-343)||(35489199-35489256)
chr1 (292-340)||(11900915-11900963)
chr1 (286-334)||(49166689-49166737)
[»] chr7 (3 HSPs)
chr7 (273-350)||(2635665-2635742)
chr7 (286-344)||(17801463-17801521)
chr7 (286-350)||(15996197-15996261)
[»] chr6 (2 HSPs)
chr6 (286-340)||(5069945-5069999)
chr6 (286-338)||(24252962-24253014)
[»] chr8 (1 HSPs)
chr8 (292-343)||(40223309-40223360)
[»] chr3 (1 HSPs)
chr3 (319-353)||(50561050-50561084)
[»] chr2 (1 HSPs)
chr2 (287-352)||(11564994-11565059)


Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 15474229 - 15474590
Alignment:
Q  18 ccatctaagtaagcagaaggaaccattggaccaatcaatttagcaggaaacatctcagttagccctttcacaaccttcaatacaaaaagaaaattgttaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15474229 ccatctaagtaagcagaaggaaccattggaccaatcaatttagcaggaaacatctcagttagccctttcacaaccttcaatacaaaaagaaaattgttaa 15474328  T
Q  118 tcatcaattcatcgtcaactaaaattcataagagaaacattggtccattaaaattaaccaaatatcaaatattttagtcatggatggaaaaccggtcaca 217  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15474329 tcatcaattcatcgtcaactaaaattcataagagaaagattggtccataaaaattaaccaaatatcaaatattttagtcatggatggaaaaccggtcaca 15474428  T
Q  218 tttataagnnnnnnncaactttttagatacattgaatagttatttatatgatctgtaaatataaccacatacaataattattcaatgtttctacaaactt 317  Q
    ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||    
T  15474429 tttataagaaaaaaataactttttagatacattgaatagttatttatatgatctgtaaatataacccgatacgataattattcaatgtttctacaaactt 15474528  T
Q  318 gttttttgcttataaatatgatcggaaagagtaataaaatgctaagaatttgtacctatgct 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15474529 gttttttgcttataaatatgatcggaaagagtaataaaatgctaagaatttgtacctctgct 15474590  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 15466086 - 15466192
Alignment:
Q  18 ccatctaagtaagcagaaggaaccattggaccaatcaatttagcaggaaacatctcagttagccctttcacaacc-ttcaatacaaaaagaaaattgtta 116  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||||||||    
T  15466086 ccatctaagtaagcagaaggaaccattggaccaatcattttagctggaaaaagctcagttagccctttcacaacctttcaatacaaaaagaaaattgtta 15466185  T
Q  117 atcatca 123  Q
    || ||||    
T  15466186 atgatca 15466192  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 20269469 - 20269583
Alignment:
Q  233 caactttttagatacattgaatagtt-atttatatgatctgtaaatataaccacatacaataattattcaatgtttctacaaacttgttttttgcttata 331  Q
    |||||||||||||| |||||||| || || ||| ||| ||  |||||| || | ||||| |||||||||||||| |||| ||| |||||||||| |||||    
T  20269469 caactttttagatatattgaataattgatgtatctgacctacaaatatgacgaaatacattaattattcaatgtatctaaaaaattgttttttgtttata 20269568  T
Q  332 aatatgatcggaaag 346  Q
    ||| |||||||||||    
T  20269569 aatgtgatcggaaag 20269583  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 341
Target Start/End: Original strand, 22398073 - 22398181
Alignment:
Q  234 aactttttagatacattgaatagttatt-tatatgatctgtaaatataaccacatacaataattattcaatgtttctacaaacttgttttttgcttataa 332  Q
    ||||||||||||  |||||||| ||||| |||||  ||| ||||||| |||| ||||| |||||||||||||  |||| ||| |||| ||||  ||||||    
T  22398073 aactttttagatttattgaataattattgtatatagtctataaatatgaccaaatacattaattattcaatgaatctaaaaagttgtattttatttataa 22398172  T
Q  333 atatgatcg 341  Q
    |||||||||    
T  22398173 atatgatcg 22398181  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 28351025 - 28351082
Alignment:
Q  286 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcgga 343  Q
    ||||| || ||||||||||  |||| ||| ||||||||||||||||||||||| ||||    
T  28351025 atacattagttattcaatgaatctaaaaagttgttttttgcttataaatatgaccgga 28351082  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 210 - 343
Target Start/End: Original strand, 38562130 - 38562264
Alignment:
Q  210 cggtcacatttataagnnnnnnncaactttttagatacattgaatagttatt-tatatgatctgtaaatataaccacatacaataattattcaatgtttc 308  Q
    ||||||||||||||||       |||||| |||||||||||||||| ||| | ||||||  || ||||| | |||  ||||| |||||||||||||| ||    
T  38562130 cggtcacatttataagcaaaaaacaacttgttagatacattgaataattaatgtatatgtcctataaatgtgaccggatacattaattattcaatgtatc 38562229  T
Q  309 tacaaacttgttttttgcttataaatatgatcgga 343  Q
    || ||| ||||||||||||||||||| ||| ||||    
T  38562230 taaaaaattgttttttgcttataaatgtgaccgga 38562264  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 38562185 - 38562137
Alignment:
Q  286 atacaataattattcaatgtttctacaaacttgttttttgcttataaat 334  Q
    ||||| |||||||||||||| ||||  || |||||||||||||||||||    
T  38562185 atacattaattattcaatgtatctaacaagttgttttttgcttataaat 38562137  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 1610023 - 1609959
Alignment:
Q  286 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcggaaagagta 350  Q
    ||||| |||||||||||||| |||| ||| ||||||||||||||||||| |||||||| ||||||    
T  1610023 atacattaattattcaatgtatctaaaaagttgttttttgcttataaatgtgatcggatagagta 1609959  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 24419614 - 24419679
Alignment:
Q  286 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcggaaagagtaa 351  Q
    ||||| ||||||||||||||  ||| ||| ||||||||||||||||||| ||| ||||| ||||||    
T  24419614 atacattaattattcaatgtacctaaaaagttgttttttgcttataaatgtgaccggaaggagtaa 24419679  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 350
Target Start/End: Original strand, 20814858 - 20814892
Alignment:
Q  316 ttgttttttgcttataaatatgatcggaaagagta 350  Q
    ||||||||||||||||||||||||||||| |||||    
T  20814858 ttgttttttgcttataaatatgatcggaaggagta 20814892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 35489256 - 35489199
Alignment:
Q  286 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcgga 343  Q
    ||||| |||||||||||||| |||| ||| |||||||||| |||||||| ||| ||||    
T  35489256 atacattaattattcaatgtatctaaaaagttgttttttgattataaatgtgaccgga 35489199  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 11900915 - 11900963
Alignment:
Q  292 taattattcaatgtttctacaaacttgttttttgcttataaatatgatc 340  Q
    |||||||||||||| |||| ||| ||| |||||| ||||||||||||||    
T  11900915 taattattcaatgtatctaaaaagttggtttttgtttataaatatgatc 11900963  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 49166689 - 49166737
Alignment:
Q  286 atacaataattattcaatgtttctacaaacttgttttttgcttataaat 334  Q
    ||||| ||||||||||||||  ||| ||| |||||||||||||||||||    
T  49166689 atacattaattattcaatgtaactaaaaagttgttttttgcttataaat 49166737  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 350
Target Start/End: Original strand, 2635665 - 2635742
Alignment:
Q  273 taaatataaccacatacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcggaaagagta 350  Q
    ||||||| |||||||||| || ||||||||||| | || ||| ||||||||| |||||||||||||||| || |||||    
T  2635665 taaatatgaccacatacattagttattcaatgtatttaaaaaattgttttttacttataaatatgatcgaaatgagta 2635742  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 17801463 - 17801521
Alignment:
Q  286 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcggaa 344  Q
    ||||| |||||||||||||  |||| ||| |||||||||| ||||||||||||| ||||    
T  17801463 atacattaattattcaatgaatctaaaaagttgttttttgattataaatatgattggaa 17801521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 15996197 - 15996261
Alignment:
Q  286 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcggaaagagta 350  Q
    ||||| |||||||||||||| |||| |||  |||||||||||||| || |||  |||||||||||    
T  15996197 atacattaattattcaatgtatctaaaaaagtgttttttgcttatgaaaatggccggaaagagta 15996261  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 340
Target Start/End: Complemental strand, 5069999 - 5069945
Alignment:
Q  286 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatc 340  Q
    ||||| |||||||||||||| |||| ||| ||||||||||||||||||| |||||    
T  5069999 atacattaattattcaatgtatctaaaaagttgttttttgcttataaatgtgatc 5069945  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 24252962 - 24253014
Alignment:
Q  286 atacaataattattcaatgtttctacaaacttgttttttgcttataaatatga 338  Q
    ||||| ||||||||||||||  ||| ||| || ||||||||||||||||||||    
T  24252962 atacattaattattcaatgtacctaaaaagttattttttgcttataaatatga 24253014  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 40223309 - 40223360
Alignment:
Q  292 taattattcaatgtttctacaaacttgttttttgcttataaatatgatcgga 343  Q
    |||||||||||||| |||| ||  |||||||||||||||||| |||||||||    
T  40223309 taattattcaatgtatctaaaacgttgttttttgcttataaaaatgatcgga 40223360  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 50561084 - 50561050
Alignment:
Q  319 ttttttgcttataaatatgatcggaaagagtaata 353  Q
    ||||||||||||||||||||||||| |||||||||    
T  50561084 ttttttgcttataaatatgatcggagagagtaata 50561050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 11565059 - 11564994
Alignment:
Q  287 tacaataattattcaatgtttctacaaacttgttttttgcttataaatatgatcggaaagagtaat 352  Q
    |||| |||||||||||||| |||| ||  ||||||||||||||||||| ||| ||||  |||||||    
T  11565059 tacattaattattcaatgtatctaaaatgttgttttttgcttataaatgtgaccggagggagtaat 11564994  T

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