View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16914_low_8 (Length: 214)
Name: NF16914_low_8
Description: NF16914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16914_low_8 |
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| [»] scaffold1320 (1 HSPs) |
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Alignment Details
Target: scaffold1320 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold1320
Description:
Target: scaffold1320; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 56 - 209
Target Start/End: Complemental strand, 1732 - 1579
Alignment:
| Q |
56 |
ctgactttaagtgtgatatttttacaatttataactattagttaaaacacgaaattaaaagaaaatgttttctggaattgaattgcaatttgtatttatt |
155 |
Q |
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| T |
1732 |
ctgacttttagtgtgatatttttacaatttataactattagtgaaaacacgaaattaaaagaaaatgttttctggaactgaattgcaatttgtatttatt |
1633 |
T |
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| Q |
156 |
tcttgtaactttttcagaagactggttgaagttgcaagaagctgatgatgatgt |
209 |
Q |
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| T |
1632 |
tcttgtaactttttcagaggactggttgaagttgcaagaagctgatgatgatgt |
1579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 56 - 209
Target Start/End: Complemental strand, 15079136 - 15078983
Alignment:
| Q |
56 |
ctgactttaagtgtgatatttttacaatttataactattagttaaaacacgaaattaaaagaaaatgttttctggaattgaattgcaatttgtatttatt |
155 |
Q |
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| T |
15079136 |
ctgacttttagtgtgatatttttacaatttataactattagtgaaaacacgaaattaaaagaaaatgttttctggaactgaattgcaaattgtatttatt |
15079037 |
T |
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| Q |
156 |
tcttgtaactttttcagaagactggttgaagttgcaagaagctgatgatgatgt |
209 |
Q |
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| T |
15079036 |
tcttgtaactttttcagaagactggttgaagttgcaagaagctgatgatgatgt |
15078983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 56 - 209
Target Start/End: Original strand, 15167138 - 15167291
Alignment:
| Q |
56 |
ctgactttaagtgtgatatttttacaatttataactattagttaaaacacgaaattaaaagaaaatgttttctggaattgaattgcaatttgtatttatt |
155 |
Q |
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| T |
15167138 |
ctgacttttagtgtgatatttttacaatttataactattagtgaaaacacgaaattaaaagaaaatgttttctggaactgaattgcaatttgtatttatt |
15167237 |
T |
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| Q |
156 |
tcttgtaactttttcagaagactggttgaagttgcaagaagctgatgatgatgt |
209 |
Q |
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| T |
15167238 |
tcttgtaactttttcagaggactggttgaagttgcaagaagctaatgatgatgt |
15167291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 15163312 - 15163446
Alignment:
| Q |
69 |
tgatatttttacaatttataactattagttaaaacacgaaattaaaagaaaatgttttctggaattgaattgcaatttgtatttatttcttgtaactttt |
168 |
Q |
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| T |
15163312 |
tgatatttttacgattta--attattagtgaaaacatgaaattaaaagaaa--gttttctggaactgaattgcaatt-gtatttatttcttttaactttt |
15163406 |
T |
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| Q |
169 |
tcagaagactggttgaagttgcaagaagctgatgatgatg |
208 |
Q |
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| T |
15163407 |
tcagaggactggttgaagttgcaagaagctgatgatgatg |
15163446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32409209 - 32409172
Alignment:
| Q |
1 |
cataatatatgtaaggttcgggttcaaatcccgaccac |
38 |
Q |
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| T |
32409209 |
cataatatatgtaaggttcgggttcaaacctcgaccac |
32409172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25023656 - 25023688
Alignment:
| Q |
1 |
cataatatatgtaaggttcgggttcaaatcccg |
33 |
Q |
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| T |
25023656 |
cataatatatgtaaagttcgggttcaaatcccg |
25023688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6219893 - 6219856
Alignment:
| Q |
1 |
cataatatatgtaaggttcgggttcaaatcccgaccac |
38 |
Q |
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| T |
6219893 |
cataatatatgtaaggtccgggttcaaatcctgaccac |
6219856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 42267231 - 42267267
Alignment:
| Q |
2 |
ataatatatgtaaggttcgggttcaaatcccgaccac |
38 |
Q |
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| T |
42267231 |
ataatatatgtaaggtccaggttcaaatcccgaccac |
42267267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 44717394 - 44717430
Alignment:
| Q |
2 |
ataatatatgtaaggttcgggttcaaatcccgaccac |
38 |
Q |
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| T |
44717394 |
ataatatatgtaagattcgagttcaaatcccgaccac |
44717430 |
T |
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