View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16915_low_1 (Length: 543)
Name: NF16915_low_1
Description: NF16915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16915_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 4 - 524
Target Start/End: Original strand, 5524979 - 5525499
Alignment:
| Q |
4 |
ggtgcagccaccgccgttaaaccctcattcccggcgacaaaagcgcaaatctacggtgcaacccggccaacctaccgtccacaaacccaccgttaccgta |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |||||| |
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| T |
5524979 |
ggtgcagccaccgccgttaaaccctcattcccggcgacaaaagcgcaaatctacggcgccacccgcccaacctaccgtccacaaacccaccgtcaccgta |
5525078 |
T |
|
| Q |
104 |
acaaccgtaactggtgttgcaccatttgttgctggcttcttctcatcctcatcttcatcctcatcctcctcggcgtcgctggcaccgtcgtctacttcct |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5525079 |
acaaccgtaactggtgttgcaccatttgttgctggcttcttctcatcctcatcttcgtcctcatcctcctcggcgtcgctggcaccgtcgtctacttcct |
5525178 |
T |
|
| Q |
204 |
ctaccatccccaacgtccttccttctcagtcacctcccttaaactcacttcgtctgagtttgacctaactctttccaccacaaaccctaacgagaaaata |
303 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5525179 |
ctaccatccccaacgtccttccttcaccgtcacctcccttaaactcacctcctctgaatttgacctaactctttccaccacaaaccctaacgagaaaata |
5525278 |
T |
|
| Q |
304 |
acattttcttaccaaccaatctccgtttctcttctatccggtgaactcgacgttggtgacggtgttattccgtcgtttgagcatggaacgaagaatacta |
403 |
Q |
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||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5525279 |
acattttcttaccaacccatctcagtttctcttctagccggtgaactcgacgttggtgacggtgttattccgtcgtttgagcatggaacgaagaatacta |
5525378 |
T |
|
| Q |
404 |
caatgttgaaagctttggttgagagaaagagtgtgaagaggaagtcattggagttgaagatgaagatggagactaaggtggaggctaagatgtgggtttt |
503 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5525379 |
cgatgttgaaagctttggttgagagaaagagtgtgaagaggaagtcattggagttgaagatgaagatggagactaaggtggaggctaagatgtgggtttt |
5525478 |
T |
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| Q |
504 |
caagactccacgtgttggaat |
524 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
5525479 |
caagactccacatgttggaat |
5525499 |
T |
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