View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16915_low_3 (Length: 494)
Name: NF16915_low_3
Description: NF16915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16915_low_3 |
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| [»] chr2 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0171 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0223 (1 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0027 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 28595989 - 28596476
Alignment:
| Q |
1 |
attagactccaattatattgtagggtccgttctataattagactctaaagtatgacataagtcactctaatatgatataatatgaccactcaaatttcag |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28595989 |
attagactccaattgtattgtagggtccgttctataattagactctaaagtatgacataagtcactctaatatgatataatatgaccactcgaatttcag |
28596088 |
T |
|
| Q |
101 |
aaggcacgcattctcaagggatgaataagaaatgagagaattggcttgaaaatgcgtagaatagaagatggagaagagaaatctcgaaaagccttcatgc |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28596089 |
aaggcacacattctcaagggatgaataagaaatgagagaagtggcttgaaaatgcgtagaatagaagatggagaagagaaatctcgaaaagccttcatac |
28596188 |
T |
|
| Q |
201 |
tttggtacacgaggatttattgttgatagaaattgaaaatttttgagag-aaaaaattaaggttgtggaattttaaacaataagacaaaatatattctat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28596189 |
tttggtacacgaggatttattgttgatagaaattgaaaattttcgagagaaaaaaattaaggttgtggaattttaaacaataagacaaaatatattctat |
28596288 |
T |
|
| Q |
300 |
gaatcaatgaacctaagagnnnnnnnnnttaaggttgtggcacatatcaacttaatcctaatatatggatcgatgaacctatgaatcaacgtattctatg |
399 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28596289 |
gaatcaatgaacctaagag--aaaaaaattaaggttgtggcacata-----ttaatcctaatatatggatcgatgaacctatgaatcaacgtattctaag |
28596381 |
T |
|
| Q |
400 |
cattatttgttatagtgcttgcnnnnnnngaatatcagttatagtgaatcacggatacggacacggacacgacacggataatgacacgccgacac |
494 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
28596382 |
cattatttgttatagtgcttgctttttttgaatatcagttatagtgaatcacggatacgtacacggacacgacacggacaatgacacgccgacac |
28596476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 494
Target Start/End: Complemental strand, 19536504 - 19536453
Alignment:
| Q |
444 |
tgaatcacggatacggacac-ggacacgacacggataatgacacgccgacac |
494 |
Q |
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|||| ||| ||||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
19536504 |
tgaagcacagatacggacaccggacacgacacggacaatgacacgccgacac |
19536453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 444 - 494
Target Start/End: Original strand, 12696278 - 12696328
Alignment:
| Q |
444 |
tgaatcacggatacggacacggacacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | |||||||||||||| |
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|
| T |
12696278 |
tgaagcacggatacggacacggacacgacacggacactgacacgccgacac |
12696328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 444 - 494
Target Start/End: Complemental strand, 853965 - 853914
Alignment:
| Q |
444 |
tgaatcacggatacggacac-ggacacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
853965 |
tgaatcacggatacggacaccggacacgacacggatgctgacacgccgacac |
853914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 444 - 494
Target Start/End: Original strand, 9658833 - 9658883
Alignment:
| Q |
444 |
tgaatcacggatacggacacggacacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||| | |||||||||||||| |
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|
| T |
9658833 |
tgaagcacggatacagacacagacacgacacggacactgacacgccgacac |
9658883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 494
Target Start/End: Original strand, 23374 - 23424
Alignment:
| Q |
444 |
tgaatcacggatacggacacggacacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || | |||||||||||||| |
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| T |
23374 |
tgaagcacggatacggacacggacacgacacagacactgacacgccgacac |
23424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 494
Target Start/End: Original strand, 24105632 - 24105682
Alignment:
| Q |
444 |
tgaatcacggatacggacacggacacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| | |||||||||||||| |
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|
| T |
24105632 |
tgaagcacggatacggatacggacacgacacggacactgacacgccgacac |
24105682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 494
Target Start/End: Original strand, 27944994 - 27945045
Alignment:
| Q |
444 |
tgaatcacggatacggacac-ggacacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| | |||||||||||||| |
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| T |
27944994 |
tgaagcacggatacggacaccggacacgacacggacactgacacgccgacac |
27945045 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 494
Target Start/End: Original strand, 20125 - 20176
Alignment:
| Q |
444 |
tgaatcacggatacggacac-ggacacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
|||| ||| ||||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
20125 |
tgaagcacagatacggacaccggacacgacacggacaatgacacgccgacac |
20176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 494
Target Start/End: Original strand, 22013367 - 22013418
Alignment:
| Q |
444 |
tgaatcacggatacggacac-ggacacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| | |||||||||||||| |
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|
| T |
22013367 |
tgaagcacggatacggacaccggacacgacacggacactgacacgccgacac |
22013418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 494
Target Start/End: Original strand, 42469174 - 42469225
Alignment:
| Q |
444 |
tgaatcacggatacggacacgga-cacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
|||| |||||| |||||||| || |||||||||||||||||||||||||||| |
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|
| T |
42469174 |
tgaagcacggacacggacaccgaacacgacacggataatgacacgccgacac |
42469225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 494
Target Start/End: Original strand, 15382436 - 15382481
Alignment:
| Q |
450 |
acggatacggacac-ggacacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
15382436 |
acggacacggacaccggacacgacacggacaatgacacgccgacac |
15382481 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 494
Target Start/End: Original strand, 30135277 - 30135317
Alignment:
| Q |
454 |
atacggacacggacacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
30135277 |
atacggacacggacacgacacagataccgacacgccgacac |
30135317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 444 - 494
Target Start/End: Complemental strand, 126454 - 126404
Alignment:
| Q |
444 |
tgaatcacggatacggacacggacacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
|||| |||||||||| |||||||||||| ||||||| ||||||||| |||| |
|
|
| T |
126454 |
tgaagcacggatacgcacacggacacgatacggatactgacacgccaacac |
126404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 444 - 494
Target Start/End: Complemental strand, 4298991 - 4298941
Alignment:
| Q |
444 |
tgaatcacggatacggacacggacacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
4298991 |
tgaagcacggatatggacacggacacgacacagatactaacacgccgacac |
4298941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 476
Target Start/End: Complemental strand, 34451142 - 34451110
Alignment:
| Q |
444 |
tgaatcacggatacggacacggacacgacacgg |
476 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
34451142 |
tgaagcacggatacggacacggacacgacacgg |
34451110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 444 - 494
Target Start/End: Original strand, 34315666 - 34315716
Alignment:
| Q |
444 |
tgaatcacggatacggacacggacacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
|||| |||||||||||| | |||||||||||||||| ||||| |||||||| |
|
|
| T |
34315666 |
tgaagcacggatacggatatggacacgacacggatactgacatgccgacac |
34315716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 494
Target Start/End: Original strand, 46641 - 46686
Alignment:
| Q |
450 |
acggatacggaca-cggacacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
46641 |
acggacacggacatcggacacgacacggacaatgacacgccgacac |
46686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 494
Target Start/End: Complemental strand, 23293086 - 23293041
Alignment:
| Q |
450 |
acggatacggacac-ggacacgacacggataatgacacgccgacac |
494 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
23293086 |
acggacacggacaccggacacgacacggacaatgacacgccgacac |
23293041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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