View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16915_low_4 (Length: 407)
Name: NF16915_low_4
Description: NF16915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16915_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 51273743 - 51274120
Alignment:
| Q |
15 |
aattttatctcaaagcataaactcctcgtatcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaat |
114 |
Q |
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| T |
51273743 |
aattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctcaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaat |
51273842 |
T |
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| Q |
115 |
tcgaccttaaactcagcaatataacaagataaat-catc-cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaaaccataca |
212 |
Q |
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| T |
51273843 |
tcgatcctaaacttgacaatataacaagaaaaaaacatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacg |
51273942 |
T |
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| Q |
213 |
tggtagagtctaccatgtatgcaacatcctcacgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgt |
312 |
Q |
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| T |
51273943 |
tggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtca-caataaacgtgaccgtgt |
51274041 |
T |
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| Q |
313 |
actcgaaggcttcgtttgcgaaccttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
395 |
Q |
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| T |
51274042 |
actagaaggctttgtttgtgaacctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
51274120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 236 - 395
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
236 |
acatcctcacgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcgaaggcttcgtttgcgaac |
335 |
Q |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
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| Q |
336 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
395 |
Q |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
5051299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 5051624 - 5051458
Alignment:
| Q |
15 |
aattttatctcaaagcataaactcctcgtatcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaat |
114 |
Q |
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| T |
5051624 |
aattttatctcaaagcgtaaactcctcgtatggttctcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaat |
5051525 |
T |
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| Q |
115 |
tcgaccttaaactcagcaatataacaagat-aaatcatccttatattcgagaattgttggattttca |
180 |
Q |
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| T |
5051524 |
tcgaccctaaactcgacaatataacaagataaaatcatccttatattcgagaattgttggattttca |
5051458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 45 - 276
Target Start/End: Original strand, 14907802 - 14908035
Alignment:
| Q |
45 |
tcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagat |
144 |
Q |
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| T |
14907802 |
tcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataacaagaa |
14907901 |
T |
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| Q |
145 |
aa-atcatc-cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaaaccatacatggtagagtctaccatgtatgcaacatcct |
242 |
Q |
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| T |
14907902 |
aataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaacatcct |
14908001 |
T |
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| Q |
243 |
cacgaaagattggatcaaacttccactccctcca |
276 |
Q |
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||| |||||| |||||||| |||||||||||||| |
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| T |
14908002 |
cacaaaagataggatcaaatttccactccctcca |
14908035 |
T |
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