View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16915_low_5 (Length: 380)
Name: NF16915_low_5
Description: NF16915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16915_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 33393430 - 33393318
Alignment:
| Q |
134 |
ctatcagagcaatgctatat--gtcccgaattattcttcgggaaatatcacgagcgtgtatttgtgacttcaagtaaaaagaaaaagagcatagttttat |
231 |
Q |
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| T |
33393430 |
ctatcagagcaatgctatatatgtcccgaattattcttcgggaaatatcacgagcgtgtatttgtgacttcaagtaaaaagaaaaagagcatagttttat |
33393331 |
T |
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| Q |
232 |
attttgaatagac |
244 |
Q |
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| T |
33393330 |
attttgaatagac |
33393318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 33393252 - 33393197
Alignment:
| Q |
310 |
aagaaaattagggtaaaaaa-gttgatgtaattgattaaaattttaaactagatac |
364 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33393252 |
aagaaaattagggtaaaaaaagttgatgtaattgattaaaattttaaactagatac |
33393197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 33393553 - 33393507
Alignment:
| Q |
8 |
catcatcacgtggtttcgtttttgttatgtttaattatagtgttttgttg |
57 |
Q |
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| T |
33393553 |
catcatcacgtggtttcgttttt---atgtttaattatagtgttttgttg |
33393507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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