View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16915_low_8 (Length: 291)
Name: NF16915_low_8
Description: NF16915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16915_low_8 |
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| [»] chr8 (7 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 38321626 - 38321348
Alignment:
| Q |
13 |
aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38321626 |
aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccc |
38321527 |
T |
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| Q |
113 |
cagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38321526 |
cagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttga |
38321427 |
T |
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| Q |
213 |
gtaacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcc |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38321426 |
gtaacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcc |
38321348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 38300876 - 38300603
Alignment:
| Q |
18 |
atataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaa |
117 |
Q |
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|||||||||||||||||||||||||| |||| |||| || || |||| ||| ||||||||||||||||||| |||||| ||| |||||||||| | |||| |
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| T |
38300876 |
atataaacttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaa |
38300777 |
T |
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| Q |
118 |
gaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaac |
217 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| | || |||||||||||||||||| |
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| T |
38300776 |
ggagtacttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaac |
38300677 |
T |
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| Q |
218 |
aatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcc |
291 |
Q |
| |
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||| ||||||||| |||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38300676 |
aattagccaatgttgaaagcttaatccttgggtcaagaaccgctcccattgcaagaacaacactatactcatcc |
38300603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 38317531 - 38317253
Alignment:
| Q |
13 |
aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccc |
112 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||||||| | | |
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| T |
38317531 |
aatatatataaacttacattgaataggccgtgagataaagactttaatttcttttgcaatggcatggtagaagattggtcctgagtagttctttttaggc |
38317432 |
T |
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| Q |
113 |
cagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttga |
212 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| || |||| || |||||||||||| |
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| T |
38317431 |
cagaagaagtgcttttgctagaatacttgtcaaatagcatgtacaactttctctttactagttgcaacttctgctcgcaggttgatggatcaagttttga |
38317332 |
T |
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| Q |
213 |
gtaacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcc |
291 |
Q |
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|||||||| |||||| || |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
38317331 |
gtaacaataagccaacgtcgaaaacttcatccgtgggtcaagaactgctcccagtgcaagaacaacactatactcatcc |
38317253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 24 - 287
Target Start/End: Complemental strand, 38309517 - 38309254
Alignment:
| Q |
24 |
acttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaata |
123 |
Q |
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|||||||||||||||||| |||||| ||||||| || |||||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||| || |
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| T |
38309517 |
acttacatcaaataggccctgagataaagactttaacttcttttgcaatggcacactagaagattggtcctgaattgttctttgcacgccagaagaagta |
38309418 |
T |
|
| Q |
124 |
cttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgag |
223 |
Q |
| |
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||||||| ||||| ||||| |||||||||||||||||| |||||||||| |||||||||||||| |||| || ||| ||||||||||||||||| || |
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| T |
38309417 |
cttttgcaagaattcttgtgaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcaggttgatgcattaagttttgagtaacaataag |
38309318 |
T |
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| Q |
224 |
ccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactc |
287 |
Q |
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||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38309317 |
ccaatgtggaaagctttatccttgggtcaagaaccgctcccaatgcaagaacaacactatactc |
38309254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 38326369 - 38326100
Alignment:
| Q |
20 |
ataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaaga |
119 |
Q |
| |
|
|||||||||| |||||| ||||||||| ||||||| | ||||||||||||| |||| | ||||||| | |||||| ||||||||||| |||||||| |
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| T |
38326369 |
ataaacttaccccaaatataccgtgagataaagacttggagttcttttgcaatgacatggtcgaagattggccctgaacagttctttgcatgccagaaga |
38326270 |
T |
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| Q |
120 |
aatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaa |
219 |
Q |
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| ||| || ||||||||||||| ||||||||||||||||||| || |||||| |||||||||||||||||||| || |||||||||||||||||||| |
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| T |
38326269 |
agtacgttggctagaatacttgccaaatagcatgtacaacttcgtccttacttgttgcaacttcctttcacaggttgatgcatcaagttttgagtaacaa |
38326170 |
T |
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| Q |
220 |
tgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcat |
289 |
Q |
| |
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| ||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38326169 |
taagccaatgttgaaaatttaatccgtgggtcaagaaccgctcccaatgcaagaacaacactgtactcat |
38326100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 38314116 - 38313851
Alignment:
| Q |
17 |
tatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccaga |
116 |
Q |
| |
|
||||||||| |||||||| |||| || |||||||||||| | |||||||||||||||||| ||||||||| | ||| ||||||| ||||||||| ||| |
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| T |
38314116 |
tatataaacgtacatcaactaggtcgagagatgaagactcagagttcttttgcaatggcatggtagaagattggccctaaatagttgtttgcaccctaga |
38314017 |
T |
|
| Q |
117 |
agaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaa |
216 |
Q |
| |
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|||| ||||||||||||| |||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||| | || ||| |||||||||||| |
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| T |
38314016 |
agaagtacttttgctagagtacttggcaaatagcatgtacaactttgtctttactttttgcaacttccgttcacaagttgatggatctagttttgagtaa |
38313917 |
T |
|
| Q |
217 |
caatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacacta |
282 |
Q |
| |
|
||| ||||||| | ||||| |||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
38313916 |
caagcagccaatcttgaaaatttcatccgtgggtcaagaactgctcccattgcaagaacaacacta |
38313851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 38306778 - 38306540
Alignment:
| Q |
13 |
aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccc |
112 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| |||||| | |||||||||||||||||| ||||||||| | |||||| |||| |||||| | |
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| T |
38306778 |
aatatatatgaacttacatcaaataggccatgagataaagactcagagttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcatac |
38306679 |
T |
|
| Q |
113 |
cagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttga |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| | || ||| |||||||| |
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| T |
38306678 |
cagaagaagtacttttgctagaatacttgtcaaatagcatgtacaactttgtctttactttttgcaacttccgttcacaagttgatggatcgagttttga |
38306579 |
T |
|
| Q |
213 |
gtaacaatgagccaatgtagaaaacttcatccgtgggtc |
251 |
Q |
| |
|
|||||||| |||||| | || || |||||||||||||| |
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| T |
38306578 |
gtaacaatcagccaaccttgagaatttcatccgtgggtc |
38306540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 38849805 - 38850092
Alignment:
| Q |
13 |
aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctga---------atagttc |
103 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||| |
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| T |
38849805 |
aatatataaaaacttacatcaaataggccatgagataaagactttaatttcttttgtaatggcatgctagaagattggtcctgattctccttaatagttc |
38849904 |
T |
|
| Q |
104 |
tttgcaccccagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatc |
203 |
Q |
| |
|
|||| ||||||| || | | || |||| ||||| ||| |||||||||||| ||||||| |||||||||| || | |||||||||||||| || |||| |
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|
| T |
38849905 |
tttgaaccccagcagtagtgctgttgccagaatgcttctcaaatagcatgcacaactttctctttacttgctgtagcttcctttcacaggttgatgcatc |
38850004 |
T |
|
| Q |
204 |
aagttttgagtaacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcc |
291 |
Q |
| |
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|||||||| ||||||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38850005 |
cagttttgaataacaataagccaaggttgtaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcc |
38850092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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