View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16915_low_9 (Length: 263)
Name: NF16915_low_9
Description: NF16915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16915_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 28596574 - 28596733
Alignment:
| Q |
1 |
gtccgtacttcatactttacacatcatgaagtgtaaaattgatgaattgtttaactggctgaaaaattgagtttgatagaacaacaaaaaatagaaatgg |
100 |
Q |
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| T |
28596574 |
gtccgtgcttcatactttaaacatcatgaagtgtacaattgatgaattgtttaactggctgaaaaattgagtttgatagaacaacaaaaaatagaaatgg |
28596673 |
T |
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| Q |
101 |
aaagacaacaaaagttacaatagaaaatgagtcctaatttatagttaccatgttttcctt |
160 |
Q |
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| T |
28596674 |
aaagacaacaaaagttacaatagaaaatgagtcctaatttatagttaccatgttttcctt |
28596733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 139 - 247
Target Start/End: Original strand, 28596768 - 28596876
Alignment:
| Q |
139 |
ttatagttaccatgttttccttgagaggaagagatttggagattgaggaaggaactcattcctaaagcccatccaatgccctattttgacagaccattta |
238 |
Q |
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| T |
28596768 |
ttatagttaccatgttttccttgagaggaagagatttggagattgaggaaggaactcattcctaaagcccatccaatgccctattttgacagaccattta |
28596867 |
T |
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| Q |
239 |
tctcagtag |
247 |
Q |
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| T |
28596868 |
tctcagtag |
28596876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 4861164 - 4861241
Alignment:
| Q |
162 |
agaggaagagatttggagattgaggaaggaactcattcctaaagcccatccaatgccctattttgacagaccatttat |
239 |
Q |
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| T |
4861164 |
agaggaagagattaggagattgaggaaggaactcattcctaaagcgcagccaatgccgtattttgacagaccatttat |
4861241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 4860736 - 4860848
Alignment:
| Q |
16 |
tttacacatcatgaagtgtaaaattgatgaattgtttaac--------tggctgaaaaattgagtttgatagaacaacaaaaaatagaaatggaaagaca |
107 |
Q |
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| T |
4860736 |
tttaaacatcatgaactgtaaaattgatgaat-gtttaaccgtgtaggtggctgaaaaattgagtttgatagaacaacagaaaatggaaatggaaaggca |
4860834 |
T |
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| Q |
108 |
acaaaagttacaat |
121 |
Q |
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| T |
4860835 |
acaaaaggtacaat |
4860848 |
T |
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