View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16916_high_4 (Length: 440)
Name: NF16916_high_4
Description: NF16916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16916_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 266 - 365
Target Start/End: Original strand, 40165337 - 40165436
Alignment:
| Q |
266 |
ccatgatccttgattgttgtcaacaacatgaggatcatttaagattctaattctgctgttaattttcttaaaaattaaaataaagttggaaacttgggat |
365 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40165337 |
ccatgatcattgattgttgtcaacaacatgaggatcatttaagattctaattctactgttatttttcttaaaaattaaaataaagttggaaagttgggat |
40165436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 40165206 - 40165250
Alignment:
| Q |
267 |
catgatccttgattgttgtcaacaacatgaggatcatttaagatt |
311 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
40165206 |
catgatccttgattgctgtcaaaaacatgaggatcatttaagatt |
40165250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 40165510 - 40165565
Alignment:
| Q |
368 |
atcctctctaaactttgccttctaatttttcttctgtgtgtttcacatttgcaattatt |
426 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| || ||||| |||| |
|
|
| T |
40165510 |
atcctctctaaactttgccttc---tttttcttctgtgtgtttcatatctgcaaatatt |
40165565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 263 - 365
Target Start/End: Complemental strand, 45455903 - 45455801
Alignment:
| Q |
263 |
attccatgatccttgattgttgtcaacaacatgaggatcatttaagattctaattctgctgttaattttcttaaaaattaaaataaagttggaaacttgg |
362 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45455903 |
attccatgatcattgattgttgtcaacaacatgagaatcatttaagattctaattctactgttaattttcaaaaaaattaaaataaagttggaaacttgg |
45455804 |
T |
|
| Q |
363 |
gat |
365 |
Q |
| |
|
||| |
|
|
| T |
45455803 |
gat |
45455801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 426
Target Start/End: Complemental strand, 45455727 - 45455672
Alignment:
| Q |
368 |
atcctctctaaactttgccttctaatttttcttctgtgtgtttcacatttgcaattatt |
426 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||| || ||||| |||| |
|
|
| T |
45455727 |
atcctctccaaactttgccttct---ttttcttctgtgtgtttcatatctgcaaatatt |
45455672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 7827204 - 7827154
Alignment:
| Q |
261 |
ctattccatgatccttgattgttgtcaacaacatgaggatcatttaagatt |
311 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| ||||||||| |||||||| |
|
|
| T |
7827204 |
ctattccatgatcgttgattgttgacaacaacttgaggatcaattaagatt |
7827154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 426
Target Start/End: Complemental strand, 7827111 - 7827056
Alignment:
| Q |
368 |
atcctctctaaactttgccttctaatttttcttctgtgtgtttcacatttgcaattatt |
426 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| || ||||| |||| |
|
|
| T |
7827111 |
atcctctctaaactttgccttc---tttttcttctgtgtgtttcatatctgcaaatatt |
7827056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 28362560 - 28362531
Alignment:
| Q |
12 |
agagagggacaaccaagaagaatatgatat |
41 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28362560 |
agagagggacaaccaagaagaatatgatat |
28362531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University