View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16916_high_5 (Length: 435)
Name: NF16916_high_5
Description: NF16916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16916_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 421
Target Start/End: Complemental strand, 34816230 - 34815822
Alignment:
| Q |
13 |
tcatgaacaaaacccttgacttctttcaaactaaaaagaagcaaccttctccttatcattttcactcattccatgtttatccaaaatatttttaacgaag |
112 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34816230 |
tcatgaacaaaacccttgacttcttccaaactaaaaagaagcaaccttctccttatcattttcactcattccatgtttatccaaaatatttttaacgaag |
34816131 |
T |
|
| Q |
113 |
tattcagagtaacttcccttataagacaatgatctgttaataaatatcttgcatctatatttatcaaatatcacgtgttttaatttagttatttcaatct |
212 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34816130 |
tattctgagtaacttcccttataagacaatgatctgttaataaatatcttgcatctatatttatcaaatatcatgtgttttaatttagttatttcaatct |
34816031 |
T |
|
| Q |
213 |
atttgaacataaatttaacgacattcggtgtataattcagtttgcccaacatccaccagtaatacatggatcagttagtagcaagccgtgttgatgactc |
312 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
34816030 |
atttgaacataaatttaaagacattcggtgtataattcagtttgcccaacatccaccagcaatacatggatcagttagtagcaagccgtgttgatcactc |
34815931 |
T |
|
| Q |
313 |
aaaggtgctatctccattctaaaataacgttgtttttgtaaaaataaactgtttaagaactatgatgaacagacacaattgttggaaaaactgatagaag |
412 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34815930 |
aaaggtactatctccattctaaaataacgttgtttttgtaaaaataaactgtttaagaactatgatgaacagacacaattgttggaaaaactgatacaag |
34815831 |
T |
|
| Q |
413 |
tgcaaaatg |
421 |
Q |
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| T |
34815830 |
tgcaaaatg |
34815822 |
T |
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