View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16916_low_1 (Length: 918)
Name: NF16916_low_1
Description: NF16916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16916_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 469
Target Start/End: Complemental strand, 15692194 - 15691733
Alignment:
| Q |
8 |
gtgcagaaacataggtcttttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgttgtaatgttggctagtgacacaatgaccctt |
107 |
Q |
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| T |
15692194 |
gtgcataaacataggtcttttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgttgtaatgttggctagtgacacaatgaccctt |
15692095 |
T |
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| Q |
108 |
ccaaaacccaaacaacctgcattttcaatcggaagaatgacctctaatgattcatctaccacgaaaagtttcaaggatccttccatcaatgatgtaacag |
207 |
Q |
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| T |
15692094 |
ccaaaacccaaacaacctgcattttcaattggaagaatgacctctactgattcatcttcctcaaaaagtttcaaggatccttccatcaatgatgtaacag |
15691995 |
T |
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| Q |
208 |
tctcaaacattttaccaaggtaaggatattgggacaaacacctatttcctttgtgataatcgaacagtcgaacaggaagatcgaatgccaagaaagtgaa |
307 |
Q |
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| T |
15691994 |
tctcaaacattttaccaaggtaaggatatcggaacaaacaccgttttcctttgttgtaa--------ttgaacaggaagatcaaatgccaaggaagtgaa |
15691903 |
T |
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| Q |
308 |
gactcttcggatttatgcagttagaaaaaatcatgtatcctatgctggtttggagaatagaccacaattgtacgtataattagagaca--------gatg |
399 |
Q |
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| T |
15691902 |
gactcttcggatatatgcagttagacaaaagcaaatatcctatgctggtttggagaatagaccacaattgtacgtataattagagacaggaagactgagg |
15691803 |
T |
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| Q |
400 |
taaactatgcttaacaacgactaacagagatttagagttaaatgttctgttttgaaattttcgcatgaca |
469 |
Q |
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| T |
15691802 |
ataactatacataacaacgactaaaagatatacagagttaaatgttctgttttgaaatttttacatgaca |
15691733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 15721874 - 15721756
Alignment:
| Q |
16 |
acataggtcttttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgttgtaatgttggctagtgacacaatgacccttccaaaacc |
115 |
Q |
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| T |
15721874 |
acataggtttattgtgtgtacaagaagatgcagcagatcgaccaacaatgtccaccgttgttgtcatgctaggtagtgacacaataacccttccaaatcc |
15721775 |
T |
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| Q |
116 |
caaacaacctgcattttca |
134 |
Q |
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| T |
15721774 |
caagccaccagcattttca |
15721756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 15696570 - 15696449
Alignment:
| Q |
27 |
ttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgttgtaatgttggctagtgacacaatgacccttccaaaacccaaacaacctg |
126 |
Q |
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| T |
15696570 |
ttgtgtgtacaacaagatgctgcagatcgaccaaccatgtccacggtcgttgctatgctaggcagtgacacaatgcccattccaaaacccaagcaaccgg |
15696471 |
T |
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| Q |
127 |
cattttcaatcggaagaatgac |
148 |
Q |
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| T |
15696470 |
cattttcagtaggaagaatgac |
15696449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 6e-18; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 476 - 546
Target Start/End: Complemental strand, 27635346 - 27635278
Alignment:
| Q |
476 |
tgttgaacttactaagcactagttaacttgcacagcaagttaacttgttctgcaagttattctacaccatt |
546 |
Q |
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| T |
27635346 |
tgttgaacttactaagcactagttaacttgtgcagcaagttaacttgt--tgcaagttattccacaccatt |
27635278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 3095687 - 3095804
Alignment:
| Q |
27 |
ttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgttgtaatgttggctagtgacacaatgacccttccaaaacccaaacaacctg |
126 |
Q |
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| T |
3095687 |
ttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccag |
3095786 |
T |
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| Q |
127 |
cattttcaatcggaagaa |
144 |
Q |
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| T |
3095787 |
cattttcagttggaagaa |
3095804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 4547244 - 4547127
Alignment:
| Q |
27 |
ttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgttgtaatgttggctagtgacacaatgacccttccaaaacccaaacaacctg |
126 |
Q |
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|||||||| ||||||||||| | ||||||||||||||||| | ||||||||| ||| |||| ||||||||||| | ||||| || || ||||| |||| |
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| T |
4547244 |
ttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgacacaatagcacttcccaatcctaaacatcctg |
4547145 |
T |
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| Q |
127 |
cattttcaatcggaagaa |
144 |
Q |
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| T |
4547144 |
cattttcagttggaagaa |
4547127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 3081253 - 3081367
Alignment:
| Q |
30 |
tgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgttgtaatgttggctagtgacacaatgacccttccaaaacccaaacaacctgcat |
129 |
Q |
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| T |
3081253 |
tgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccagcat |
3081352 |
T |
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| Q |
130 |
tttcaatcggaagaa |
144 |
Q |
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| T |
3081353 |
tttcagttggaagaa |
3081367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 476 - 546
Target Start/End: Complemental strand, 34521032 - 34520964
Alignment:
| Q |
476 |
tgttgaacttactaagcactagttaacttgcacagcaagttaacttgttctgcaagttattctacaccatt |
546 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||| |||||||| |
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| T |
34521032 |
tgttgaacttactatgcactagttaacttttgcagcaagttaacttgt--tgcaagttattccacaccatt |
34520964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 3103826 - 3103876
Alignment:
| Q |
27 |
ttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgtt |
77 |
Q |
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| T |
3103826 |
ttgtgtgtacaagaagatgcagcagatagacctacaatgtcaagtgttgtt |
3103876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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