View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16916_low_11 (Length: 236)
Name: NF16916_low_11
Description: NF16916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16916_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 3706529 - 3706310
Alignment:
| Q |
17 |
caaatcaaattttcccatcacacacttcgcatttacctttactcaaatcagcacaagcaaatccaaatgcacaaaagcatatcaggttcatcattgggac |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3706529 |
caaatcaaattttcccatcacacacttcacatttacctttactcaaatcagcacaagcaaatcaaaatgcacaaaagcatatcaggttcatcattgggac |
3706430 |
T |
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| Q |
117 |
caggtggtttggacctaactcaatccttcttcaagtccatccaacatgcctcacctccttctccaaccaaacgccacaacaagatctcagttatcggcgc |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3706429 |
cagatggtttggacctaactcaatccttcttcaagtccatccaacatgcctcacctccttctccaaccaaacgccacaacaagatctcagttatcggcgc |
3706330 |
T |
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| Q |
217 |
aggcaacgtgggaatggcta |
236 |
Q |
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|||||||||||||||||||| |
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| T |
3706329 |
aggcaacgtgggaatggcta |
3706310 |
T |
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