View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16916_low_12 (Length: 234)

Name: NF16916_low_12
Description: NF16916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16916_low_12
NF16916_low_12
[»] scaffold0440 (1 HSPs)
scaffold0440 (106-220)||(9997-10111)
[»] chr2 (4 HSPs)
chr2 (102-220)||(31528524-31528641)
chr2 (107-220)||(13710205-13710316)
chr2 (118-217)||(31626688-31626784)
chr2 (116-220)||(40018113-40018216)
[»] chr5 (6 HSPs)
chr5 (107-220)||(15532199-15532311)
chr5 (110-220)||(15542384-15542493)
chr5 (111-220)||(33575223-33575331)
chr5 (108-221)||(22159880-22159992)
chr5 (108-213)||(26711464-26711567)
chr5 (108-213)||(26981201-26981304)
[»] chr4 (2 HSPs)
chr4 (107-220)||(12172106-12172219)
chr4 (108-219)||(2542018-2542128)
[»] chr3 (6 HSPs)
chr3 (107-220)||(11138569-11138681)
chr3 (108-220)||(22626312-22626423)
chr3 (104-217)||(39563506-39563617)
chr3 (174-218)||(20536401-20536445)
chr3 (179-219)||(35366510-35366549)
chr3 (179-219)||(46731589-46731629)
[»] chr6 (4 HSPs)
chr6 (107-220)||(13017188-13017300)
chr6 (106-220)||(22221856-22221969)
chr6 (106-220)||(22247691-22247804)
chr6 (108-220)||(1838609-1838720)
[»] chr7 (7 HSPs)
chr7 (116-218)||(294997-295098)
chr7 (116-220)||(11279626-11279728)
chr7 (116-220)||(36222317-36222419)
chr7 (108-220)||(23759609-23759719)
chr7 (108-217)||(33313133-33313239)
chr7 (116-220)||(46846320-46846422)
chr7 (170-219)||(3861968-3862016)
[»] scaffold0264 (1 HSPs)
scaffold0264 (108-220)||(24185-24296)
[»] chr8 (1 HSPs)
chr8 (106-219)||(12575298-12575410)


Alignment Details
Target: scaffold0440 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 106 - 220
Target Start/End: Complemental strand, 10111 - 9997
Alignment:
Q  106 cttgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattat 205  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10111 cttgatagaaatttggcaagtgaatcaaattcgatcgaagtaataaaagaattcgtttcctcagggactgtatttaacttctacttagcaatttcattat 10012  T
Q  206 taaaaaggatgtata 220  Q
    |||||||||||||||    
T  10011 taaaaaggatgtata 9997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 220
Target Start/End: Complemental strand, 31528641 - 31528524
Alignment:
Q  102 gcttcttgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttca 201  Q
    |||| |||||||| |||||| |||||||||||||||||| |||||||||||| |||| |||||| |  ||| ||||||||||||||||||||||||||||    
T  31528641 gctttttgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaa-aatttgtttccacgaggactgtatttaacttctacttagcaatttca 31528543  T
Q  202 ttattaaaaaggatgtata 220  Q
    |||||||||||||||||||    
T  31528542 ttattaaaaaggatgtata 31528524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 13710316 - 13710205
Alignment:
Q  107 ttgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattatt 206  Q
    |||||||| |||||| ||||||||||||||| || ||||||||||||  ||||||||   |  | | |||||||||||||||||||||||||||||||||    
T  13710316 ttgatagatatttggcaagtgaaccaaattcaatcgaagtaataaaa--attcgtttttacgagaactgtatttaacttctacttagcaatttcattatt 13710219  T
Q  207 aaaaaggatgtata 220  Q
    ||||||||||||||    
T  13710218 aaaaaggatgtata 13710205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 31626784 - 31626688
Alignment:
Q  118 ttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattattaaaaaggatgt 217  Q
    |||||||||||||||||||| || ||||||||||||  |||||||||     ||| |||||| |||||||||||||||||||||||||||||||||||||    
T  31626784 ttggtaagtgaaccaaattcaatcgaagtaataaaa--attcgtttcaatgaggactgtatt-aacttctacttagcaatttcattattaaaaaggatgt 31626688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 40018216 - 40018113
Alignment:
Q  116 atttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattattaaaaaggat 215  Q
    |||||| ||||||||||||||| || |||||||||||| |||| |||| | || ||| || |||||||||| |||| |||||||  ||||||||||||||    
T  40018216 atttggcaagtgaaccaaattcaatcgaagtaataaaa-aatttgttttcacaaggagtgcatttaacttcgacttggcaatttttttattaaaaaggat 40018118  T
Q  216 gtata 220  Q
    |||||    
T  40018117 gtata 40018113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 15532199 - 15532311
Alignment:
Q  107 ttgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattatt 206  Q
    |||||||| |||||| | |||||||||||||||| |||||||||||| ||||||||||| |  ||| |||||||||||||||||||||||||||||||||    
T  15532199 ttgatagatatttggcatgtgaaccaaattcgatcgaagtaataaaa-aattcgtttccacgaggactgtatttaacttctacttagcaatttcattatt 15532297  T
Q  207 aaaaaggatgtata 220  Q
    ||||||||||||||    
T  15532298 aaaaaggatgtata 15532311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 15542384 - 15542493
Alignment:
Q  110 atagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattattaaa 209  Q
    ||||| |||||| |||||||||||||||||| |||||||||||| ||||||||||| |  ||| ||||||||||||||||||| ||||||||||||||||    
T  15542384 atagatatttggcaagtgaaccaaattcgatcgaagtaataaaa-aattcgtttccacgaggactgtatttaacttctacttaacaatttcattattaaa 15542482  T
Q  210 aaggatgtata 220  Q
    |||||||||||    
T  15542483 aaggatgtata 15542493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 33575331 - 33575223
Alignment:
Q  111 tagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattattaaaa 210  Q
    ||||||||||| ||||||||||||||| || |||||||||||| ||||||||| | |  ||| ||||||||||||||| |||||||||| ||||||||||    
T  33575331 tagaaatttggcaagtgaaccaaattcaatcgaagtaataaaa-aattcgttttcacgaggactgtatttaacttctatttagcaattttattattaaaa 33575233  T
Q  211 aggatgtata 220  Q
    ||||||||||    
T  33575232 aggatgtata 33575223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 22159992 - 22159880
Alignment:
Q  108 tgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattatta 207  Q
    ||||||| |||||  ||||| |||||||||||| |||||||||||| |||| |||||| |  ||| ||||||||||||||||||||||||||| || | |    
T  22159992 tgatagatatttgacaagtgtaccaaattcgatcgaagtaataaaa-aatttgtttccacgaggactgtatttaacttctacttagcaatttctttgtca 22159894  T
Q  208 aaaaggatgtatat 221  Q
    ||||||||||||||    
T  22159893 aaaaggatgtatat 22159880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 26711464 - 26711567
Alignment:
Q  108 tgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattatta 207  Q
    ||||||| |||||| ||||||||||||||| || |||||||||||| ||||||||||| |  ||| |||||| ||||||||||||||||||||||||| |    
T  26711464 tgatagatatttggcaagtgaaccaaattcaattgaagtaataaaa-aattcgtttccacgaggactgtatt-aacttctacttagcaatttcattatca 26711561  T
Q  208 aaaagg 213  Q
    ||||||    
T  26711562 aaaagg 26711567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 26981201 - 26981304
Alignment:
Q  108 tgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattatta 207  Q
    ||||||| |||||| ||||||||||||||| || |||||||||||| ||||||||||| |  ||| |||||| ||||||||||||||||||||||||| |    
T  26981201 tgatagatatttggcaagtgaaccaaattcaattgaagtaataaaa-aattcgtttccacgaggactgtatt-aacttctacttagcaatttcattatca 26981298  T
Q  208 aaaagg 213  Q
    ||||||    
T  26981299 aaaagg 26981304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 12172219 - 12172106
Alignment:
Q  107 ttgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattatt 206  Q
    |||||||| |||||| |||||||||||||||||| |||||||||||| |  |||||||| |  ||| |||||||||||||||||||||||||||||||||    
T  12172219 ttgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaagatcgtttccacgaggactgtatttaacttctacttagcaatttcattatt 12172120  T
Q  207 aaaaaggatgtata 220  Q
    ||||||||||||||    
T  12172119 aaaaaggatgtata 12172106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 219
Target Start/End: Complemental strand, 2542128 - 2542018
Alignment:
Q  108 tgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattatta 207  Q
    ||||||| |||||| ||||| |||||| || || |||||||||||  ||||||| ||| |  ||| ||||||||||||||||| ||||||||||||||||    
T  2542128 tgatagatatttggcaagtgtaccaaagtcaatcgaagtaataaat-aattcgtatccacgaggactgtatttaacttctactgagcaatttcattatta 2542030  T
Q  208 aaaaggatgtat 219  Q
    ||||||||||||    
T  2542029 aaaaggatgtat 2542018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 11138569 - 11138681
Alignment:
Q  107 ttgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattatt 206  Q
    |||||||| |||||| |||||||||||||||||| |||||||||||| | ||||||||| |  ||| |||||||||||||||||||||||||||||||||    
T  11138569 ttgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaa-agttcgtttccacgaggactgtatttaacttctacttagcaatttcattatt 11138667  T
Q  207 aaaaaggatgtata 220  Q
    ||||||||||||||    
T  11138668 aaaaaggatgtata 11138681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 22626312 - 22626423
Alignment:
Q  108 tgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattatta 207  Q
    ||||||| |||||| |||||||||||||||||| |||||||||||| | ||||||||| |  ||| ||||||||||||||||||||||||||||||||||    
T  22626312 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaa-agttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 22626410  T
Q  208 aaaaggatgtata 220  Q
    |||||||||||||    
T  22626411 aaaaggatgtata 22626423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 39563506 - 39563617
Alignment:
Q  104 ttcttgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcatt 203  Q
    ||||||||||| |||||| ||||||||||||||| ||  ||||||||||| ||||||||||| |  ||| |||||| |||||||||||||||||||||||    
T  39563506 ttcttgatagatatttggcaagtgaaccaaattcaatcaaagtaataaaa-aattcgtttccacgaggactgtatt-aacttctacttagcaatttcatt 39563603  T
Q  204 attaaaaaggatgt 217  Q
    || |||||||||||    
T  39563604 ataaaaaaggatgt 39563617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 20536401 - 20536445
Alignment:
Q  174 tgtatttaacttctacttagcaatttcattattaaaaaggatgta 218  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  20536401 tgtatttaacttctacttagaaatttcattattaaaaaggatgta 20536445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 35366549 - 35366510
Alignment:
Q  179 ttaacttctacttagcaatttcattattaaaaaggatgtat 219  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  35366549 ttaacttctacttagcaatttcatta-taaaaaggatgtat 35366510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 46731629 - 46731589
Alignment:
Q  179 ttaacttctacttagcaatttcattattaaaaaggatgtat 219  Q
    |||||||||||| ||||||||| |||| |||||||||||||    
T  46731629 ttaacttctactcagcaatttctttatcaaaaaggatgtat 46731589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 13017188 - 13017300
Alignment:
Q  107 ttgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattatt 206  Q
    |||||||| |||||| |||||||||||||||||| |||||||||||| | ||||||||| |  ||| | |||||||||||||||||||||||||||||||    
T  13017188 ttgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaa-agttcgtttccacgaggactatatttaacttctacttagcaatttcattatt 13017286  T
Q  207 aaaaaggatgtata 220  Q
    ||||||||||||||    
T  13017287 aaaaaggatgtata 13017300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 220
Target Start/End: Complemental strand, 22221969 - 22221856
Alignment:
Q  106 cttgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattat 205  Q
    |||||||||||||||| ||||| ||||||  | || |||||| ||| | ||||||||||| |  ||| | |||||| |||||||| ||||||||||||||    
T  22221969 cttgatagaaatttggcaagtgtaccaaaagctatcgaagtagtaata-aattcgtttccacgaggactatatttagcttctactaagcaatttcattat 22221871  T
Q  206 taaaaaggatgtata 220  Q
    |||||||||||||||    
T  22221870 taaaaaggatgtata 22221856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 220
Target Start/End: Complemental strand, 22247804 - 22247691
Alignment:
Q  106 cttgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattat 205  Q
    |||||||||||||||| ||||| ||||||  | || |||||| ||| | ||||||||||| |  ||| | |||||| |||||||| ||||||||||||||    
T  22247804 cttgatagaaatttggcaagtgtaccaaaagctatcgaagtagtaata-aattcgtttccacgaggactatatttagcttctactaagcaatttcattat 22247706  T
Q  206 taaaaaggatgtata 220  Q
    |||||||||||||||    
T  22247705 taaaaaggatgtata 22247691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 1838720 - 1838609
Alignment:
Q  108 tgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattatta 207  Q
    ||||||| |||||| |||||||||||| |  || |||||||||||  ||||||| ||| || |||  ||  |||| |||||||  |||||||| |||| |    
T  1838720 tgatagagatttggcaagtgaaccaaaatt-atcgaagtaataaataaattcgtatccacaaggaccgttgttaatttctactcggcaatttctttatca 1838622  T
Q  208 aaaaggatgtata 220  Q
    |||||||||||||    
T  1838621 aaaaggatgtata 1838609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 295098 - 294997
Alignment:
Q  116 atttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattattaaaaaggat 215  Q
    |||||| ||||||||||||||| || |||||||||||| |||| || ||| |  ||| ||||||||||||||||||||||||||||||||||||||||||    
T  295098 atttggcaagtgaaccaaattcaatcgaagtaataaaa-aatttgtgtccacgaggactgtatttaacttctacttagcaatttcattattaaaaaggat 295000  T
Q  216 gta 218  Q
    |||    
T  294999 gta 294997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 11279728 - 11279626
Alignment:
Q  116 atttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattattaaaaaggat 215  Q
    |||||| ||||||||||||||| || ||||||||||||  ||| |||||| || ||| | ||||||| ||||||||||||||||||||||||||||||||    
T  11279728 atttggcaagtgaaccaaattcaatcgaagtaataaaa--atttgtttccacaaggactatatttaatttctacttagcaatttcattattaaaaaggat 11279631  T
Q  216 gtata 220  Q
    |||||    
T  11279630 gtata 11279626  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 36222317 - 36222419
Alignment:
Q  116 atttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattattaaaaaggat 215  Q
    |||||| || |||||||||||| || ||||||||||||  ||||||| || |  ||||||||||||| |||||| |||||||||||||||||||||||||    
T  36222317 atttggcaaatgaaccaaattcaattgaagtaataaaa--attcgttaccacgaggattgtatttaatttctacgtagcaatttcattattaaaaaggat 36222414  T
Q  216 gtata 220  Q
    |||||    
T  36222415 gtata 36222419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 23759609 - 23759719
Alignment:
Q  108 tgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattatta 207  Q
    ||||||| |||||| ||||||||||||||| || |||||||||||| | ||||||||  |  ||| ||||||||||||||||||||||| |||||| |||    
T  23759609 tgatagatatttggcaagtgaaccaaattcaatcgaagtaataaaa-agttcgtttctacgaggactgtatttaacttctacttagcaaattcatt-tta 23759706  T
Q  208 aaaaggatgtata 220  Q
    |||||||||||||    
T  23759707 aaaaggatgtata 23759719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 33313239 - 33313133
Alignment:
Q  108 tgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattatta 207  Q
    ||||||| |||||  ||||||| ||||||| || ||||||||||||  |||||||||  |  ||| |||||| |||||||||||||||||||||||||||    
T  33313239 tgatagatatttgagaagtgaaacaaattcaatcgaagtaataaaa--attcgtttctacgaggactgtatt-aacttctacttagcaatttcattatta 33313143  T
Q  208 aaaaggatgt 217  Q
    ||||||||||    
T  33313142 aaaaggatgt 33313133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 46846320 - 46846422
Alignment:
Q  116 atttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattattaaaaaggat 215  Q
    |||||| ||||||| || |||| || ||||||||||||  ||  |||||| |  ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  46846320 atttggcaagtgaatcagattcaatcgaagtaataaaaatat--gtttccacgaggactgtatttaatttctacttagcaatttcattattaaaaaggat 46846417  T
Q  216 gtata 220  Q
    |||||    
T  46846418 gtata 46846422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 3861968 - 3862016
Alignment:
Q  170 ggattgtatttaacttctacttagcaatttcattattaaaaaggatgtat 219  Q
    |||||||  |||||||||||||||||||||||||||| ||||||||||||    
T  3861968 ggattgttattaacttctacttagcaatttcattatt-aaaaggatgtat 3862016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 24185 - 24296
Alignment:
Q  108 tgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattatta 207  Q
    |||||||||||||| ||||| ||||||  | || |||||| ||| | |||| |||||| |  ||| ||||||||||||||||| | ||||||||||||||    
T  24185 tgatagaaatttggcaagtgtaccaaaagctatcgaagtagtaata-aatttgtttccacgaggactgtatttaacttctactcaacaatttcattatta 24283  T
Q  208 aaaaggatgtata 220  Q
    |||||||||||||    
T  24284 aaaaggatgtata 24296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 12575298 - 12575410
Alignment:
Q  106 cttgatagaaatttggtaagtgaaccaaattcgatggaagtaataaaagaattcgtttcctcagggattgtatttaacttctacttagcaatttcattat 205  Q
    ||||||| | |||||| ||||| ||||||||| || |||||||||||  ||||||| ||| |  ||| |||  |||||||||||| | ||| ||||||||    
T  12575298 cttgataaatatttggcaagtgtaccaaattcaatcgaagtaataaat-aattcgtatccacgaggactgttgttaacttctactcaacaagttcattat 12575396  T
Q  206 taaaaaggatgtat 219  Q
    ||||||||||||||    
T  12575397 taaaaaggatgtat 12575410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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