View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16916_low_13 (Length: 214)
Name: NF16916_low_13
Description: NF16916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16916_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 52711326 - 52711128
Alignment:
| Q |
1 |
aagtaacactaattttgcattttatataggttagcagagtggaagaaagcgtctcaatcaggcaaggtcatc----atttttatttgggttacaattgat |
96 |
Q |
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| T |
52711326 |
aagtaacactaattttgcattttatataggttagcagagtgtaagaaagcgtctcaatcaggcaaggtcatccatcatttttatttgggttacaattgat |
52711227 |
T |
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| Q |
97 |
ttatggctgtaacaaataatgtaggctggccggcacaaacttggttaacaaatggaagctccacaagcatttagggtattaataatttgattgtgacat |
195 |
Q |
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| T |
52711226 |
ttatggctgtaacaaataatgtaggctggccggcacaaacttggttaacaaatggaagctccacaagcatttagggtattaataatttgattgtgacat |
52711128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 52720187 - 52720012
Alignment:
| Q |
1 |
aagtaacactaattttgcattttatataggttagcagagtggaagaaagcgtctcaatcaggcaaggtcatcatttttatttgggttacaattgatttat |
100 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
52720187 |
aagtaacactaattttacattttatatatgttagcagagtggaagaaagcgtctcgatcaggcagggtcat---ttttatttgggttacagttgatttat |
52720091 |
T |
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| Q |
101 |
ggctgtaacaaataatgtaggctggccggcacaaacttggttaacaaatggaagctccacaagcatttagggtattaat |
179 |
Q |
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| T |
52720090 |
ggctgtaacaaataatgtaggctggctggcacaaacttggttaacaaatggaggcttcacaggcatttagggtattaat |
52720012 |
T |
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