View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16916_low_2 (Length: 644)

Name: NF16916_low_2
Description: NF16916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16916_low_2
NF16916_low_2
[»] scaffold0024 (3 HSPs)
scaffold0024 (419-627)||(29163-29371)
scaffold0024 (21-152)||(64166-64298)
scaffold0024 (307-419)||(64300-64412)
[»] chr7 (2 HSPs)
chr7 (43-211)||(16088420-16088589)
chr7 (46-113)||(15011078-15011144)
[»] chr8 (6 HSPs)
chr8 (50-211)||(14400321-14400485)
chr8 (43-176)||(17124335-17124469)
chr8 (43-92)||(23538953-23539001)
chr8 (51-158)||(16227689-16227794)
chr8 (154-211)||(21675582-21675640)
chr8 (154-211)||(17984607-17984664)
[»] chr6 (2 HSPs)
chr6 (43-211)||(16165863-16166032)
chr6 (419-467)||(7266002-7266050)
[»] chr3 (4 HSPs)
chr3 (43-195)||(40355363-40355518)
chr3 (478-532)||(2101636-2101691)
chr3 (46-102)||(38278667-38278720)
chr3 (419-467)||(21866675-21866723)
[»] scaffold0417 (1 HSPs)
scaffold0417 (155-211)||(1793-1849)
[»] chr4 (1 HSPs)
chr4 (44-118)||(19855792-19855864)


Alignment Details
Target: scaffold0024 (Bit Score: 161; Significance: 2e-85; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 419 - 627
Target Start/End: Original strand, 29163 - 29371
Alignment:
Q  419 agtgttgtcaattatggatcacagaaaacagcggcttgttcaaatttcagtaccctacagtgctatagcgtcgttatagtcgatatttgaaaacatttgt 518  Q
    ||||||||||||| |||||| ||| ||||||| |||||||||||||||||||  |||||||| ||||||||||||||||| ||||||||| |||||||||    
T  29163 agtgttgtcaattgtggatcgcaggaaacagcagcttgttcaaatttcagtatgctacagtgatatagcgtcgttatagttgatatttgagaacatttgt 29262  T
Q  519 actaagtagtgtatgacagagcaatattgatttgttcaatactgtccactacgctatagttccatattagctgctatttgacaatactgagtcgctggat 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  29263 actaagtagtgtatgacagagcaatattgatttgttcaatactgtccactacgctagagttccacattagctgcaatttgacaatactgagtcgctggat 29362  T
Q  619 gctgtttgt 627  Q
    |||||||||    
T  29363 gctgtttgt 29371  T

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Target: scaffold0024; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 64166 - 64298
Alignment:
Q  21 tgtatctcaacatcaacaaact-aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctcaatctcaacatagtgaga 119  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  64166 tgtatctcaacatcaacaaacttaatctccaaagtagtcatgtcacatctaatcataatacatcatcaaaatataaaatctcaatctcaacatactgaga 64265  T
Q  120 ggtaaatctcataaatcataaacaaaataacaa 152  Q
    |||||||||||||||||||||||||||||||||    
T  64266 ggtaaatctcataaatcataaacaaaataacaa 64298  T

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Target: scaffold0024; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 307 - 419
Target Start/End: Original strand, 64300 - 64412
Alignment:
Q  307 catgcgtgacattttaatatcgagaaaactgaattagacatgtcagattcgtctgtttcctttccctcttcacttctgtacgtaaatctaaatttcttaa 406  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  64300 catgtgtgacattttaatatcgagaaaactgaattagacatgtcagattcgtctatttcctttccctcttcacttctgtacgtaaatctaaatttcttaa 64399  T
Q  407 tttaaaacgctta 419  Q
    |||||||||||||    
T  64400 tttaaaacgctta 64412  T

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Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 43 - 211
Target Start/End: Original strand, 16088420 - 16088589
Alignment:
Q  43 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctc-aatctcaacatagtgagaggtaaatctcataaa-tcataa 140  Q
    ||||||||||||| ||||| |||||||  || |||||||||| |||| ||   |||||| |||||||||||| |||| ||||||||||||||  ||||||    
T  16088420 aatctccaaagtatccatgccacatatc-tcgtaatacatcaccaaatta---aatctccaatctcaacatactgagtggtaaatctcataaggtcataa 16088515  T
Q  141 a-ca-aaataacaacagacagacaccctaatcagagccggacactaagactccaaaa-caagaaacgaggtagc 211  Q
    | || ||||| ||||||||||||||||||||||||||  |||||||||||||||||| ||| | ||||||||||    
T  16088516 aacataaatatcaacagacagacaccctaatcagagcgtgacactaagactccaaaatcaaaagacgaggtagc 16088589  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 15011144 - 15011078
Alignment:
Q  46 ctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctcaatctcaacata 113  Q
    ||||||| |||||||||||||| | |||||||||||||| |||| |||||| ||  ||||||||||||    
T  15011144 ctccaaaatagccatgtcacatgtcatcataatacatcaccaaagtataaactc-aaatctcaacata 15011078  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 211
Target Start/End: Complemental strand, 14400485 - 14400321
Alignment:
Q  50 aaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctc--aatctcaacatagtgagaggtaaatctcataaa-tcataaaca--- 143  Q
    ||||||||||||||||||||  ||||||||||||| |||||||   ||||||  |||||||||| | |||| | ||||||||||||  | ||||| |       
T  14400485 aaagtagccatgtcacatatc-tcataatacatcaccaaaata---aatctccaaatctcaacaaattgagtgataaatctcataatgtgataaaaacat 14400390  T
Q  144 aaataacaacagacagacaccctaatcagagccggacactaagactccaaaac-aagaaacgaggtagc 211  Q
    ||| ||||||||||| ||| | ||||||||||| | ||||||||||||||| | |||||||||||||||    
T  14400389 aaaaaacaacagacatacatcataatcagagcccggcactaagactccaaagcaaagaaacgaggtagc 14400321  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 176
Target Start/End: Original strand, 17124335 - 17124469
Alignment:
Q  43 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctc--aatctcaacatagtgagaggtaaatctcataaa-tcat- 138  Q
    ||||||||||||||||||| ||||||| ||||| |||||||| ||||||   |||||||  |||||||||| | |||| | ||||||||||||| ||||     
T  17124335 aatctccaaagtagccatgccacatat-atcatcatacatcaccaaaat---aaatctccaaatctcaacaaactgagtgataaatctcataaagtcata 17124430  T
Q  139 aaaca-aaataacaacagacagacaccctaatcagagcc 176  Q
    ||||| || |||||| ||||||||| |||||||||||||    
T  17124431 aaacataactaacaaaagacagacatcctaatcagagcc 17124469  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 23538953 - 23539001
Alignment:
Q  43 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaata 92  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  23538953 aatctccaaagtagccatgtcacatat-atcataatacatcaccaaaata 23539001  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 16227689 - 16227794
Alignment:
Q  51 aagtagccatgtcacatataatcataatacatcatcaaaatataaaatctc-aatctcaacatagtgagaggtaaatctcataaa-tcataaacaaaata 148  Q
    |||||| |||| |||||||| ||||||||||||| |||||||   |||||| |||||||||||| |||| | ||||||||||||| ||||||| | |  |    
T  16227689 aagtagacatgccacatata-tcataatacatcaccaaaata---aatctccaatctcaacatactgagtgataaatctcataaagtcataaaaacataa 16227784  T
Q  149 acaacagaca 158  Q
    ||||||||||    
T  16227785 acaacagaca 16227794  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 21675582 - 21675640
Alignment:
Q  154 agacagacaccctaatcagagccggacactaagactcc-aaaacaagaaacgaggtagc 211  Q
    ||||||||||||||||||||| || ||||||||||||| ||| ||| | ||||||||||    
T  21675582 agacagacaccctaatcagagtcgcacactaagactccgaaagcaaaagacgaggtagc 21675640  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 17984664 - 17984607
Alignment:
Q  154 agacagacaccctaatcagagccggacactaagactccaaaacaagaaacgaggtagc 211  Q
    ||||||||| | |||||| |||| |||||| |||||||||||||| ||||||| ||||    
T  17984664 agacagacatcttaatcaaagcccgacactcagactccaaaacaaaaaacgagctagc 17984607  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 16166032 - 16165863
Alignment:
Q  43 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctcaatctcaacatagtgagaggtaaa-tctcataaa-tcataa 140  Q
    ||||||||||||||||||| |||||||| ||||||||||||| ||||||| ||  ||  |||||||| | | || | | |||| |||||| |  ||||||    
T  16166032 aatctccaaagtagccatgccacatata-tcataatacatcaccaaaata-aatttccaaatctcaataaactgggtgataaaatctcatcatgtcataa 16165935  T
Q  141 acaaaataacaacagacagacaccctaatcagagccggacactaagactccaaaac-aagaaacgaggtagc 211  Q
    | | |  ||||| ||||| ||||||||| ||||||| ||||||||||||||||| | |||||||||||||||    
T  16165934 aaacataaacaatagacatacaccctaaacagagcccgacactaagactccaaagcaaagaaacgaggtagc 16165863  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 419 - 467
Target Start/End: Original strand, 7266002 - 7266050
Alignment:
Q  419 agtgttgtcaattatggatcacagaaaacagcggcttgttcaaatttca 467  Q
    ||||||||||||||||||||||||||||| || | || |||||||||||    
T  7266002 agtgttgtcaattatggatcacagaaaacggcagttttttcaaatttca 7266050  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 43 - 195
Target Start/End: Complemental strand, 40355518 - 40355363
Alignment:
Q  43 aatctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctc-aatctcaacatagtgagagg-taaatctcataaa-tcata 139  Q
    ||||| |||||||| |||| |||||||  ||||||||||||| |||||||   |||||| |||||||||||| |||| |  ||||||||||||| |||||    
T  40355518 aatcttcaaagtagtcatgccacatatc-tcataatacatcaccaaaata---aatctccaatctcaacatattgagtgaataaatctcataaagtcata 40355423  T
Q  140 aaca--aaataacaacagacagacaccctaatcagagccgg--acactaagactccaaaa 195  Q
    ||    ||||||||||||||| ||| | ||||||||||| |  |||||||||||||||||    
T  40355422 aaatgtaaataacaacagacaaacatcataatcagagcccgacacactaagactccaaaa 40355363  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 532
Target Start/End: Original strand, 2101636 - 2101691
Alignment:
Q  478 gtgctatagcgtcgttatagtcgatatttgaaaaca-tttgtactaagtagtgtat 532  Q
    |||||||||||||||||||| || ||||||| |||| |||||||||| ||||||||    
T  2101636 gtgctatagcgtcgttatagccgttatttgacaacactttgtactaaatagtgtat 2101691  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 38278720 - 38278667
Alignment:
Q  46 ctccaaagtagccatgtcacatataatcataatacatcatcaaaatataaaatctca 102  Q
    ||||||||||||||||||||  ||||||||| ||||||| | |||||||||||||||    
T  38278720 ctccaaagtagccatgtcac--ataatcatattacatca-ccaaatataaaatctca 38278667  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 419 - 467
Target Start/End: Complemental strand, 21866723 - 21866675
Alignment:
Q  419 agtgttgtcaattatggatcacagaaaacagcggcttgttcaaatttca 467  Q
    ||||||||||||| |||||  ||||||| ||||| ||||||||||||||    
T  21866723 agtgttgtcaattgtggattgcagaaaatagcggtttgttcaaatttca 21866675  T

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Target: scaffold0417 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 1793 - 1849
Alignment:
Q  155 gacagacaccctaatcagagccggacactaagactccaaaacaagaaacgaggtagc 211  Q
    |||||||| |||||| |||||| ||||||||||||||||| ||| ||||||| ||||    
T  1793 gacagacatcctaattagagcccgacactaagactccaaagcaaaaaacgagttagc 1849  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 19855864 - 19855792
Alignment:
Q  44 atctccaaagtagccatgtcacatataatcataatacatcatcaaa-atataaaatctcaatctcaacatagtgag 118  Q
    ||||| ||||||||||||||||  ||||||||| ||||||| |||| |||| ||||||||| ||||||||| ||||    
T  19855864 atctctaaagtagccatgtcac--ataatcatactacatcaccaaatatattaaatctcaa-ctcaacatactgag 19855792  T

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