View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16916_low_3 (Length: 445)
Name: NF16916_low_3
Description: NF16916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16916_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 257 - 433
Target Start/End: Complemental strand, 40088077 - 40087902
Alignment:
| Q |
257 |
tttcaaaatataaaaaccatatccttgtgaataaattacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggac |
356 |
Q |
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| T |
40088077 |
tttcaaaatataaaaaccatatccttgtgaataa-ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggac |
40087979 |
T |
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| Q |
357 |
agtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaat |
433 |
Q |
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| T |
40087978 |
agtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaat |
40087902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 40093127 - 40092880
Alignment:
| Q |
13 |
aggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaacaataaat |
112 |
Q |
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| T |
40093127 |
aggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaaaaataaat |
40093028 |
T |
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| Q |
113 |
tatgaacatttttaaaaggaacatccatcatcaactctccctccnnnnnnnnnnnnnnnnnntcaacgatcaactcatgttttaacttgttttaaaatca |
212 |
Q |
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| T |
40093027 |
tatgaacatttttagaaggaacatccatcatcaactctccctaaaaaaaataaaaaaaaaaatcaatgatcaactcatgttttaacttgttttaaaatca |
40092928 |
T |
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| Q |
213 |
acctcaacttcatttgagtttcaataacacagggtctttgagagtttc |
260 |
Q |
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| T |
40092927 |
acctcgacttcatttgagtttcaataacacaggctctttgagactttc |
40092880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 180 - 433
Target Start/End: Complemental strand, 40062311 - 40062055
Alignment:
| Q |
180 |
gatcaactcatgtttt-aacttgttttaaaatcaacctcaacttcatttgagtttcaataacacagggtctttgagagtttcaaaatataaaaaccata- |
277 |
Q |
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| T |
40062311 |
gatcaactcatatttttaacttgttttaaaatcaaccttgacttcatttgagtttcaataatacaggctctttgagactttcaaaacattagaaccataa |
40062212 |
T |
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| Q |
278 |
--tccttgtgaataaattacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttgagaaccaggatca |
375 |
Q |
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| T |
40062211 |
aattctagtgaataa-ttacctgcaagctttccgtttacgaaagcatgaagggcatggccgagtgattcaatgtgaagtacagtttgagaaccaagatca |
40062113 |
T |
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| Q |
376 |
tccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaat |
433 |
Q |
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| T |
40062112 |
tccttaagatcaacgcttcaaaagaatataatagaagtgttatcgagaagtacagaat |
40062055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 40062470 - 40062329
Alignment:
| Q |
13 |
aggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaacaataaat |
112 |
Q |
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| T |
40062470 |
aggtttgtctttgttcccggtgtgactccctaagaattcatcaataatatcatcgaaagttataatttaataattcaagaacttaatggaaacaataaat |
40062371 |
T |
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| Q |
113 |
tatgaacatttttaaaaggaacatccatcatcaactctccct |
154 |
Q |
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| T |
40062370 |
tatgaacatttttggacggaacatccaagatcaactctccct |
40062329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 292 - 429
Target Start/End: Complemental strand, 40080330 - 40080194
Alignment:
| Q |
292 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttgagaaccaggatcatccttaagatcaacgc |
391 |
Q |
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| T |
40080330 |
ttaccagcaagcttgccgtttatgaaagcatgaagggcatggccaagtgattcaatgtgcaggacagtttgagaaccgggatcatccgcaagatcaaggc |
40080231 |
T |
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| Q |
392 |
ttcaaaagaatacaatagaagtgttatcgagaagtaca |
429 |
Q |
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| T |
40080230 |
tttaaaa-aatacaagagaagtgttatcaagaagtaca |
40080194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 363
Target Start/End: Original strand, 22013454 - 22013525
Alignment:
| Q |
292 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttga |
363 |
Q |
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| T |
22013454 |
ttaccagcaagcttcccatttacaaaagcatgaagggcatggccaagggattcaatgtgaagaacaggttga |
22013525 |
T |
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