View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16916_low_6 (Length: 397)
Name: NF16916_low_6
Description: NF16916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16916_low_6 |
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| [»] chr6 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Original strand, 27776225 - 27776616
Alignment:
| Q |
7 |
atatcagggtgaatcgaaccagaaaccactcaaact-acatcagggagaattgaatcagacatcttgagtaggagcacattgtcatgtcccaagacaata |
105 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||| | ||||| ||||||||| | ||| |||||||||||||| |
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| T |
27776225 |
atatcagggtgaatcgaaccagaaaccactcaaactgacatcagggtgaatcgaaccagaaactttgaggaggagcacactttcaggtcccaagacaata |
27776324 |
T |
|
| Q |
106 |
tgatcatgtcagcccaagcaggttactaacatcattttgaatcatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatc |
205 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27776325 |
tgatcatgtcagcccaagtaggttactaacatcattttgaaacatcaacaggaaattcatgaagctcatcactccaaggattaatctccttaacaggatc |
27776424 |
T |
|
| Q |
206 |
aacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagct |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27776425 |
aacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagct |
27776524 |
T |
|
| Q |
306 |
tcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagtgtcattcttgaaggctcaatttgccaatcact |
397 |
Q |
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| T |
27776525 |
tcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagtgtcattcttgaaggctcaatttgccaatcact |
27776616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 200 - 382
Target Start/End: Complemental strand, 10280138 - 10279956
Alignment:
| Q |
200 |
aggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttccc |
299 |
Q |
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||||||||||||| | |||||| ||||||||||||| ||| ||||||||||| ||||| || |||||||||||| ||| || || | | || ||| |
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| T |
10280138 |
aggatcaacattcttcaaagcataccaaacagcagtattaaccttaaatccagatccaaaagccatttgccaaatcttatgtccctttttaactctcccc |
10280039 |
T |
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| Q |
300 |
ttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagtgtcattcttgaaggctc |
382 |
Q |
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|||||||||||||||| ||| |||||||||||||||| ||| || || ||||||||||| |||||||||||||||||||| |
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| T |
10280038 |
ttagcttcacaataagacaattcataccaaacagaacttgatgatgtgttaccatatctatatagtgtcattcttgaaggctc |
10279956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 142 - 382
Target Start/End: Original strand, 19742722 - 19742962
Alignment:
| Q |
142 |
ttgaatcatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttaca |
241 |
Q |
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||||| ||||||||||||| |||| | |||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19742722 |
ttgaaacatcaacaggaaactcatttatctcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttaca |
19742821 |
T |
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| Q |
242 |
tttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactactt |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| |
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| T |
19742822 |
cttaaatccagacccaaatgcaatttgccaaatcctatcaccttttcttattcttcctttagcttcacaatatgccaactcataccaaacagaactactt |
19742921 |
T |
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| Q |
342 |
gaagtatttccatatctataaagtgtcattcttgaaggctc |
382 |
Q |
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||||| || |||||||||||||||||||| |||||||||| |
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| T |
19742922 |
gaagtgttaccatatctataaagtgtcatctttgaaggctc |
19742962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 142 - 382
Target Start/End: Complemental strand, 19797366 - 19797126
Alignment:
| Q |
142 |
ttgaatcatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttaca |
241 |
Q |
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||||| ||||||||||||| |||| | |||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19797366 |
ttgaaacatcaacaggaaactcatttatctcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttaca |
19797267 |
T |
|
| Q |
242 |
tttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactactt |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| |
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| T |
19797266 |
cttaaatccagacccaaatgcaatttgccaaatcctatcaccttttcttattcttcctttagcttcacaatatgccaactcataccaaacagaactactt |
19797167 |
T |
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| Q |
342 |
gaagtatttccatatctataaagtgtcattcttgaaggctc |
382 |
Q |
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||||| || |||||||||||||||||||| |||||||||| |
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| T |
19797166 |
gaagtgttaccatatctataaagtgtcatctttgaaggctc |
19797126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 142 - 382
Target Start/End: Original strand, 19539679 - 19539919
Alignment:
| Q |
142 |
ttgaatcatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttaca |
241 |
Q |
| |
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||||| ||||||||||||| ||| | |||||||||||||||||| ||||| |||| |||||||||||| |||| ||||||||||||||||||||||| |
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| T |
19539679 |
ttgaaacatcaacaggaaactcacttatctcatcactccaaggattgatctctttaattggatcaacattctttaatgcacaccaaacagcagtgttaca |
19539778 |
T |
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| Q |
242 |
tttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactactt |
341 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||| |
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| T |
19539779 |
cttaaatctagacccaaatgcaatttgccaaatcctatcaccttttcttattcttcctttagcttcacaatatgccaactcataccaaacaaaactactt |
19539878 |
T |
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| Q |
342 |
gaagtatttccatatctataaagtgtcattcttgaaggctc |
382 |
Q |
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||||| || |||||||||||||||||||| |||||||||| |
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| T |
19539879 |
gaagtgttaccatatctataaagtgtcatctttgaaggctc |
19539919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 170 - 382
Target Start/End: Original strand, 19671630 - 19671842
Alignment:
| Q |
170 |
ctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgc |
269 |
Q |
| |
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|||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
19671630 |
ctcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacaggagtgttacacttaaatccagacccaaatgcaatttgc |
19671729 |
T |
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| Q |
270 |
caaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagtgtca |
369 |
Q |
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| T |
19671730 |
caaatcctatcaccttttcatactcttcctttagcttcacaatatgccaactcataccaaacagaactacttgaagtgttaccatatctataaagtgtca |
19671829 |
T |
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| Q |
370 |
ttcttgaaggctc |
382 |
Q |
| |
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| |||||||||| |
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| T |
19671830 |
tctttgaaggctc |
19671842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 152 - 397
Target Start/End: Complemental strand, 34053476 - 34053231
Alignment:
| Q |
152 |
aacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatcca |
251 |
Q |
| |
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||||||||| ||||||| |||||| |||| ||||| |||||||| | |||||||| |||| || |||| ||| |||||| ||||||||||||||||| |
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| T |
34053476 |
aacaggaaactcatgaatctcatccatccatggatttttctccttagctggatcaacggtcctcaatgcacgccacacagcactgttacatttaaatcca |
34053377 |
T |
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| Q |
252 |
gacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttc |
351 |
Q |
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|| |||||||||||||||||| ||||||||||||| || ||||| || ||||||||| ||||||||| ||||||| | |||||||| |||||||| | |
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| T |
34053376 |
gaaccaaatgcaatttgccaagtcctatcaccttttctaatcctccctttagcttcagtataagccaattcataccataatgaactactagaagtattac |
34053277 |
T |
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| Q |
352 |
catatctataaagtgtcattcttgaaggctcaatttgccaatcact |
397 |
Q |
| |
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|| |||||| |||||||||||||| || || || ||||||||||| |
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| T |
34053276 |
caaatctatttagtgtcattcttgatggttccatatgccaatcact |
34053231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 152 - 397
Target Start/End: Complemental strand, 15239777 - 15239532
Alignment:
| Q |
152 |
aacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatcca |
251 |
Q |
| |
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||||||||| ||||||| ||||||| |||||||||| ||||||| |||||| || | || | || || |||||||||| | ||||| ||||| ||| |
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| T |
15239777 |
aacaggaaactcatgaatctcatcaatccaaggattcttctcctttgcaggattaatagtcttcaatgctttccaaacagcactattacacttaaaacca |
15239678 |
T |
|
| Q |
252 |
gacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttc |
351 |
Q |
| |
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|| |||||||||||||||||| | ||||||||||| | ||||| || ||||||||| ||||||||| ||||||| | |||||||| ||||| || | |
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| T |
15239677 |
gaaccaaatgcaatttgccaagttctatcaccttttttaatcctccctttagcttcagtataagccaattcataccacaatgaactactagaagtgttac |
15239578 |
T |
|
| Q |
352 |
catatctataaagtgtcattcttgaaggctcaatttgccaatcact |
397 |
Q |
| |
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|| |||||| |||||||| ||||| || || || ||||||||||| |
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| T |
15239577 |
caaatctattcagtgtcatccttgatggttccatatgccaatcact |
15239532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 391
Target Start/End: Original strand, 23499099 - 23499244
Alignment:
| Q |
246 |
aatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaag |
345 |
Q |
| |
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||||| || |||||||| |||||||| | ||||| |||||| | ||||||||||| ||||| |||||||| | ||||||| ||||| || || | |
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| T |
23499099 |
aatcctgaaccaaatgctatttgccatgttctatctcctttcttgatccttcccttggcttccgtgtaagccaattcgtaccaaagcgaactgctcgagg |
23499198 |
T |
|
| Q |
346 |
tatttccatatctataaagtgtcattcttgaaggctcaatttgcca |
391 |
Q |
| |
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| |||||| | | |||||||||||||||||| ||||| || ||||| |
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| T |
23499199 |
tgtttccaaaacgataaagtgtcattcttgacggctccatatgcca |
23499244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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